Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03133 ATGATAATTCACAAAACTCCAAATATGGGAAAAGATGATGAAGGGTTTGATGTTCCAAAAACCATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGGGCTTCCTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAGCAATACTTTACTCCACCACCAACTCAAACACAGCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTCTTGGCAACTAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGACACAATTTACCATGGAAGCTGAAGCAGAGATCAAGCAAAGACATTATAAGGAAGAAGGTGTATGTGTGCCCAGAACCTAGTTGCGTGCACCACGAGCCTTCAAGGGCCCTGGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGgagggacagtttcataacacacagagccttctgcgatgcattagcagaggagagtGCAAGATCAGTGACAGGCATAGTAGCCAACTCAACAACTCAACCAACTGAAGCAGCAGGAGTAGTGATCTCTTCATCCTCTCTTCATCAAGACATGATCCATGCTAGTAATAATAATTTCCCATTGAAGAAAGAGCAACAAGGTTGCATACCCCATTGGCTTGGGCAACCATCACCCTCTTCTGCTTCATCATCATTCTTGTTCTCTCATCAAGATCATCATCTCCATGAAAACCCTAACCCTAGAGGTGGTCCCACTCTTCTTCCTCCTCCTTACCACCAAACAGCTCCTCACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCCCAAATGGGTGCAACGATGAGCAAAACCGGCTCCATGATTAGGACCCACCAACAGCAGGCTCACGTGTCTGCCAATGCTGCTTTGAATTTGTCCTCACGTGACCACCAGATGAACCCCACTCCCCATGACTTGCTACCTTTCGGGAATAATAAAGCTGTTGATAACGGTGTTGGTGTTTCTCCTTCACTCCTTCATCATGTTATCAATTCTTTCTCTTCTTCCCCCTTTGAAGGGACTTTTGAGGACACTTTTGGTGGTGGCGATGCCATGACCGCCGATGAAGGTGGCGGTGGCGGTGCCGGAGGAAACAATAACGAAGGCTTGACAAGAGATTTCTTGGGTCTTAGACATCTCTCTCACACTGATATCCTCAACATTGCTGGCGTGGGAAACTGCATGAACTCCTCCCAACACAACCAAACCCGAAACCCTTGGCAAGGTTAA 1443 0.4511 MIIHKTPNMGKDDEGFDVPKTMSNLTSASGEARASSGNRTEIGTDYSQQYFTPPPTQTQPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKDIIRKKVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIVANSTTQPTEAAGVVISSSSLHQDMIHASNNNFPLKKEQQGCIPHWLGQPSPSSASSSFLFSHQDHHLHENPNPRGGPTLLPPPYHQTAPHMSATALLQKAAQMGATMSKTGSMIRTHQQQAHVSANAALNLSSRDHQMNPTPHDLLPFGNNKAVDNGVGVSPSLLHHVINSFSSSPFEGTFEDTFGGGDAMTADEGGGGGAGGNNNEGLTRDFLGLRHLSHTDILNIAGVGNCMNSSQHNQTRNPWQG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03133 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 464 - -
Gma13g03133 480 MobiDBLite consensus disorder prediction 296 315 - -
Gma13g03133 480 SMART c2h2final6 134 164 IPR013087 -
Gma13g03133 480 SMART c2h2final6 169 189 IPR013087 -
Gma13g03133 480 SMART c2h2final6 92 114 IPR013087 -
Gma13g03133 480 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 464 - -
Gma13g03133 480 MobiDBLite consensus disorder prediction 20 53 - -
Gma13g03133 480 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Gma13g03133 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gma13g03133 480 MobiDBLite consensus disorder prediction 1 75 - -
Gma13g03133 480 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gma13g03133 480 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gma13g03133 480 Gene3D Classic Zinc Finger 71 140 - -
Gma13g03133 480 Gene3D Classic Zinc Finger 145 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03133 Gma-Chr13 45484702 45487500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03133 22 480 IDZ Gene Family AT3G13810 49.623 1.53e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g03133 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03133 K25870 - gmx:100819692 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03133 13 45484702 45487500 Gma15g00232 15 2028618 2031597 GST
Gma13g03133 13 45484702 45487500 Gma07g00084 07 693425 696474 PCT
Gma13g03133 13 45484702 45487500 Gma08g01775 08 15791393 15796765 PCT
Gma07g00084 07 693425 696474 Gma13g03133 13 45484702 45487500 PCT
Gma08g01775 08 15791393 15796765 Gma13g03133 13 45484702 45487500 PCT