Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03122 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGTTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTATATCACAACTTATGGGCATGGTTGCTGGAGCTCAGTCCCAAAACTTGCAGGCCTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTTAGACCTGATTTGAAACGGGGAAGCTTCACTCCTCAAGAAGCTGCACTCATTATAGAACTTCATAGTATTCTAGGAAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATCATATTCACGGTCCTCCCAATGGTTCCATGGAAAGTTTCTTCCCTTTAACTGACAACCCTATCCTAAACTCCCATCATCACTTAGACCAGCTATTCCTTCCCATCATCCCATCCCCAATCCTCCAAGCCTTTGATCATCATCACCATAATAATGATATCAAGATTGACATAAACAAATTTTTTAATAATAATGCCAATTTCCTACAATATTTTCAGAATCCAATGCCGGAAACAGTGCCTCCAATATCCAATACTACTATTCCATCTTTGTATGAAGAAGATGCATGGTCTTCTTTGGGGTGTGTACCTATTCATCTTAATCCAAATCAAGAAAATCAAATCATGATCACCAAAAGTGATCATACTACCCCACACTTGATTGTTGAGAAATTCATCAATCCAAGTACATGGCAGCAGCAGCAGCACTCTGTGGAAGTGGAACCCCCCATTTTGCCAAAAGTCTGTGAGAGCATTGAGGATTATGTCTGTAGCATCCCATATTCTTCTTCTGTTAATTCACAAGACCAACATGTGGAAGCTGTTGCGTGTTTCACACCTGTTATTTGTCCACAAGATCAAGTGGAGTACATTGATGCCCTCATCATGTCATCATTGCCATCCTCAACAACAACATCTTCATCAGTAGTATCATTCTTCCAAGCAGACAAATAG 1062 0.4077 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDHIHGPPNGSMESFFPLTDNPILNSHHHLDQLFLPIIPSPILQAFDHHHHNNDIKIDINKFFNNNANFLQYFQNPMPETVPPISNTTIPSLYEEDAWSSLGCVPIHLNPNQENQIMITKSDHTTPHLIVEKFINPSTWQQQQHSVEVEPPILPKVCESIEDYVCSIPYSSSVNSQDQHVEAVACFTPVICPQDQVEYIDALIMSSLPSSTTTSSSVVSFFQADK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03122 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma13g03122 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma13g03122 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma13g03122 353 PANTHER MYB DOMAIN PROTEIN 55 2 348 - -
Gma13g03122 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma13g03122 353 Gene3D - 11 67 - -
Gma13g03122 353 CDD SANT 17 61 IPR001005 -
Gma13g03122 353 PANTHER TRANSCRIPTION FACTOR MYB26 2 348 - -
Gma13g03122 353 SMART sant 13 63 IPR001005 -
Gma13g03122 353 SMART sant 66 114 IPR001005 -
Gma13g03122 353 Gene3D - 69 116 - -
Gma13g03122 353 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Gma13g03122 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma13g03122 353 CDD SANT 69 109 IPR001005 -
Gma13g03122 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03122 Gma-Chr13 45413140 45414489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03122 1 118 MYB Transcription Factor Family AT3G13890 95.763 6.67e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g03122 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03122 K09422 - gmx:102662609 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03122 13 45413140 45414489 Gma15g00243 15 2119018 2120382 GST