Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03119 ATGGCACGGGGGAGGATCCGGGCAAGGCTCCGAAGGAGCCATCTTTACACATTTGGTGGTTGCCTGAGGCCAACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGTTACTCACGAACAGTATACTGCAACCAGCCTCAACTCCTTGAAAAGAATTCTCTATTTTACTGCAAGAATGATGTATCAACCACCAAATATAATGTCATCACGTTTTTCCCTAAGGCATTGTTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTTTCGGCGTCTCCAATTTCACCTTTCAGCCCTCTTAGCATGATTGCTCCTTTGGCGTTTGTTGTGGGGCTTAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCAGGTTCCTTCAGGATGTCAAAGTTAATCACCGGAAAGCTAGTCTCCATAAAGGCAATGGTGATTTTGGTCTCAGGTCGTGGCAGAAGATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGGCGTCGAGTTATGAAGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTGGATAATGATGGGGCTTTTAAGGATTTCTCTGGAACAATACGTTGTGAAGATCCCAATCCCGATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAGGTTTATCCTCTTGATCCTGGTCAAATTCTTCTCCGAGATTCAAAGCTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACCAAATCCCCTTCAAAAAGAAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCGATAGGATTTGTTTTCAAGACCAAATACCAAACCCCAAAGTGGTGGTATTTACGACCTGGCAATATTGAATACCAGTTTGACCCTGGAAAACTTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTATATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGTTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAATCTGGTACTCCAGCTGAAGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTATCTGATAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCGTATGGTGTTCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCAGGAATTGAATCTCTCTAATTTCCCCATGCGTAAAGAGAGTAACGTGCCATGGGAAAATATCACAGAAGATGAAGAAACTGAATTGGGGACTGCTGTTACTTCCAAGGATGATGGAGCTCGAAGGCCTGCCATAAAGGGATTTGGGTTTGAAGATGATCGCCTTATGAATGGTAATTGGTTGAAAGAACCCAATGCCGATGTCCTTTTGCTGTTTTTCCGGATATTAGCAGTTTGCCATACAGCCATTCCTGAACTGAACGAGGAGACTGAGAGTTGTACATATGAAGCCGAATCACCTGATGAAGGAGCTTTTCTAGTAGCAGCCAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGCCATTCGTGAAAGATTTTCTGCTTCAGGTCAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGCATGTCAGTCATTGTGCGTGATGAAGAGGGAAGCATCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCTCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAATAATGAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGAGAGAGACACAATGCTTGAGCAGGTTTCAGATGTTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCAGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTCGCTTGTAGTTTACTTAGACAGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCTGTAACTAATGATGGGAAAGAGGTTATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGATAAAGCTGGAAAAGGATCCACATGCTGCGTTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGGTTGCGCATCTGTCATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGgtaacaaggttagtgaaagaaggaactgggaagaccactttagccataggtgatggtgcaaatgatgttggaatgattcaagaagctgacattggtgttggaatcagtggggttgaaggtatgcaggcagtaatggctagtgactttgctattgcccagttccggtttttggagcggcttctggtagtccatggacactggtgctaCAAGAGAATTGCACAAATGatatgttatttcttctacaaaaatatagcatttggcctcaccatattctattttgaggcctttgcgggcttctctggacaatctgtttatgatgactggtacatgatattgtttaatgttgttcttacatcattgcctgtcatttctcttggagtttttgagcaagatgttccatcagaagtttgcttacagTTTCCTGCACTGTATCAGCAAGGACCCAAGAATTTGTtctttgactggtatagaatcttgggatggatgggaaatggtctttattcctccctcatcatcttcttccttgtaataatcattttctatgaccaagcttttcgtgcaaatggccagaccacagacatggctgctgttgggaccacgatgttcacttgcatcatctgggctgtcaattgccagattgctctgacaatgagccatttcacatggattcaacacctctttgtgtggggcagcataaccacttggtacgtttttctcttgttatatggaatgcttccaccacaatattccaagtctgcctaccaactattggttgaggttcttgctcctgctcctatttattgggcagcaaccctattagtaacaatcgcatgcgttcttccttatcttgcccacatatccttccaaagatgttttaatcccatggatcatcacattatccaagaaatcaagtactacaagaaagacattgaagATCAACACATGTGGACCAGGGAGCGGTCTAAAGCACGGCACGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCAGTTTAAAGGCAAGCTGCAGAAGAAGCAGCAGTCTTCACTGGGGGCTTTCTCCCCATCATGA 3675 0.3211 MARGRIRARLRRSHLYTFGGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQLLEKNSLFYCKNDVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNHRKASLHKGNGDFGLRSWQKIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPDLYTFVGNFEYEHQVYPLDPGQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVFKTKYQTPKWWYLRPGNIEYQFDPGKLGLAGMSHLITALILYGYLIPISLYVSIEFVKVLQATFINQDIQMYDDESGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEQELNLSNFPMRKESNVPWENITEDEETELGTAVTSKDDGARRPAIKGFGFEDDRLMNGNWLKEPNADVLLLFFRILAVCHTAIPELNEETESCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVAIRERFSASGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGSERDTMLEQVSDVMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITMNSDSVTNDGKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRANGQTTDMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYVFLLLYGMLPPQYSKSAYQLLVEVLAPAPIYWAATLLVTIACVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARHETKIGFTARVEAKIRQFKGKLQKKQQSSLGAFSPS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03119 1224 Gene3D - 720 920 IPR023214 -
Gma13g03119 1224 Gene3D - 578 700 IPR023299 GO:0000166
Gma13g03119 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Gma13g03119 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1154 IPR023298 -
Gma13g03119 1224 Gene3D - 420 432 IPR023214 -
Gma13g03119 1224 SFLD p-type atpase 405 931 IPR044492 -
Gma13g03119 1224 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gma13g03119 1224 SUPERFAMILY HAD-like 411 924 IPR036412 -
Gma13g03119 1224 Coils Coil 449 469 - -
Gma13g03119 1224 Gene3D - 114 289 - -
Gma13g03119 1224 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
Gma13g03119 1224 SFLD C1.7: P-type atpase like 405 931 - -
Gma13g03119 1224 Pfam Cation transport ATPase (P-type) 546 651 - -
Gma13g03119 1224 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Gma13g03119 1224 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Gma13g03119 1224 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 846 961 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03119 1224 CDD P-type_ATPase_APLT_Dnf-like 61 1033 - -
Gma13g03119 1224 Gene3D - 433 457 IPR023299 GO:0000166
Gma13g03119 1224 SUPERFAMILY Calcium ATPase, transduction domain A 149 287 IPR008250 -
Gma13g03119 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Gma13g03119 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
Gma13g03119 1224 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Gma13g03119 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 687 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03119 Gma-Chr13 45373391 45379705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03119 1 1222 Primary Pumps ATPases AT1G17500 75.245 0.0 1924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03119 K01530 - gmx:100778710 2422.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03119 13 45373391 45379705 Gma15g00246 15 2144261 2150053 GST
Gma13g03119 13 45373391 45379705 Gma07g00071 07 574254 579663 PCT
Gma13g03119 13 45373391 45379705 Gma08g01754 08 15611710 15617478 PCT
Gma07g00071 07 574254 579663 Gma13g03119 13 45373391 45379705 PCT
Gma08g01754 08 15611710 15617478 Gma13g03119 13 45373391 45379705 PCT