Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03098 ATGGAATACCCTTTTTCCCCAAAGGATAGAGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTGGAGGGATCAGCATCATTAGATGGCAGAATGAGCAATTCAATATCAGAGGATATGCCCAATAGCTTTTCTGAGCTCATGAACTTTGATACTTATGCTGGGTTGTGCTACAGCCCATCCATAACGGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCCCCATTATCATATCCATTGCCTGATGGGTTCAATCCAGTCCAACTGAACAGTGGGCAATGCTGTATGTCAGGAGTTGGCAGAAATAACAATGATACCGAAAACTCTTCCCTTTATGGGGAGAAAGTTGTTTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAACGACACAAACGAAGCAAACAACTTGAATTCTAAGCTAAAAATTAATGTCTCTTCTCAACATCTTAATAACTCTGATACAGGCAATTATATGATGTCTAGGCCACCTGGCCTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGGATGGTGACCAATTCATCTTAAGCACGAGTGAGCAACCTTATTTGCTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTCCCTAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTCCCTGAGTGGACTTCAAATGTTGGTTATTACAGTATGAGCGAGTACTTAAGGTTCGAGCATGCAATTAATCACAAGGTTTGTGGATCAATTGCATTTCCCATATTTGATCTGCATTCTGAACTGCCATGCTGTGCTGTACTGGAACTTGTCACCACAAATGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTTGTCGTGCACTACAGGCATGTTTTTATTTTTCCAGTCTTGTAAATTTAAGGACTGCCAAGCCTCTCCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGGTTACCGCTGGGACTGACATGGATTCCCTGTTGTTTCACTGAGTGCTCAAGAGGTGAAGCTTCAAGCATACGAATTGAAGGTGGTCATTCAACTTCTAGAGGTAAAAACATACTGTGCCTTGAAGAATCTGCTTGCTATATTACTGATAGAGCAATGGGAGGATTTGTCCGTGCATGCATGGAACATCGTCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGACATATGATATTAGTGAATACCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAAAGGTAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGGACAGTTTCAGAAACCGAATTATCAGGAATGGAAAGCTTAGCAGTGGGGCTTGGAAAGAAAAATGCCCCCAGTTTTTTTCCTTTATCAAGTAGAAACTCTGAAATACCATTAATAAATGGTGACTGCGATTCTGTCCAGAAGGCAACTAACCTAAGGGACAATGAAATTGAGTCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTCCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCCGCAAAAAACATTGGTGTTTGCCCAACGACTCTGAAAAGGATATGCAGACAACATGGAATTCCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCATTGAAGAAGATACAGACggtgcttgactctgtccagggcgtagaaggagggttgaaggtgcttgactctgtccagggcgtagaaggagggttgaagTTTGATCCATCTATGGGGGCATTTGTGGCAGGAGGGTCAATCATCCAGGAAATTGATGCACATAAAAGTACTATAAAAGACCCTGTGCCTGTTGCACAAGATGCATTCTCAGTACGACCAGCACCTTGTAGTGAAGGTGAAAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGTTTCTTCAGTTAATTACAGTGAAGATTCAAAATCAATGGCAATCAATGATGGGTCGTGCCAGACGGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTCTTGCAAAAGAACATGATAAACGAATTCTGAACAAGGGCGGTTTGAGTGTAGAAAAATTTAAACGCAATATTGTTGGCCAGAGTTCAAAAACTTTGATTGGTGATGAGATGGACATTGGTGTAGATGGGGATGATGGAGTTGTTGAACGTAACCACCCTACTTCCTCAAGCTTGATAGACTCATCTAATGGCTCTGGTTCAATGATGCATAGCAGTTCATCAGGTTCTCAGAGCTTTAAGAACCAGGATCAGTCCAAAGTCAAATCAACCATTGTTGATAGTAGGTCGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAACTTTGATCCATGTGCAGGTTGTTTCAGTCTATATGAAGAAGTTGCGGCAAGATTCAAACTACAAAATGGGTTATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATAATGCTGATTTGCAAGAGTGTATAGAAATATTGGATGATATTGGCACACGTAGCGTCAGGTTTCTTGTTCGTGATATGCCTTCCGTTTTAGGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2967 0.3994 MEYPFSPKDRVIGDWQSSGAQLEGSASLDGRMSNSISEDMPNSFSELMNFDTYAGLCYSPSITDQILANELPSFAPLSYPLPDGFNPVQLNSGQCCMSGVGRNNNDTENSSLYGEKVVCQQMDTLLGFLNDTNEANNLNSKLKINVSSQHLNNSDTGNYMMSRPPGLSLDERMLRALSFFKESAGGGILAQVWVPIKDGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCSLGLPGRVFTSKVPEWTSNVGYYSMSEYLRFEHAINHKVCGSIAFPIFDLHSELPCCAVLELVTTNEKPDFDRELEIVCRALQACFYFSSLVNLRTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLGLTWIPCCFTECSRGEASSIRIEGGHSTSRGKNILCLEESACYITDRAMGGFVRACMEHRLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQRICSSLRTVSETELSGMESLAVGLGKKNAPSFFPLSSRNSEIPLINGDCDSVQKATNLRDNEIESSPNQERNGSKRQVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKVLDSVQGVEGGLKFDPSMGAFVAGGSIIQEIDAHKSTIKDPVPVAQDAFSVRPAPCSEGENFSIKLEGKLKKTNVSSVNYSEDSKSMAINDGSCQTASLCTKVQDCPEQACLGSVLAKEHDKRILNKGGLSVEKFKRNIVGQSSKTLIGDEMDIGVDGDDGVVERNHPTSSSLIDSSNGSGSMMHSSSSGSQSFKNQDQSKVKSTIVDSRSKLIVKATYREDTIRFNFDPCAGCFSLYEEVAARFKLQNGLFQLKYLDDEEEWVMLVNNADLQECIEILDDIGTRSVRFLVRDMPSVLGSSGSSNSYLGGSS 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03098 988 MobiDBLite consensus disorder prediction 841 875 - -
Gma13g03098 988 PANTHER PROTEIN NLP8 7 676 IPR045012 GO:0003700
Gma13g03098 988 Pfam RWP-RK domain 606 654 IPR003035 -
Gma13g03098 988 MobiDBLite consensus disorder prediction 578 605 - -
Gma13g03098 988 PANTHER PROTEIN NLP8 743 984 IPR045012 GO:0003700
Gma13g03098 988 SMART PB1_new 888 970 IPR000270 GO:0005515
Gma13g03098 988 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 677 743 - -
Gma13g03098 988 MobiDBLite consensus disorder prediction 578 592 - -
Gma13g03098 988 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 743 984 - -
Gma13g03098 988 ProSiteProfiles PB1 domain profile. 888 970 IPR000270 GO:0005515
Gma13g03098 988 SUPERFAMILY CAD & PB1 domains 884 973 - -
Gma13g03098 988 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 676 - -
Gma13g03098 988 MobiDBLite consensus disorder prediction 834 875 - -
Gma13g03098 988 Pfam PB1 domain 891 969 IPR000270 GO:0005515
Gma13g03098 988 ProSiteProfiles RWP-RK domain profile. 588 674 IPR003035 -
Gma13g03098 988 PANTHER PROTEIN NLP8 677 743 IPR045012 GO:0003700
Gma13g03098 988 Gene3D - 885 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03098 Gma-Chr13 45234191 45239938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03098 1 985 NLP Transcription Factor Family AT2G43500 48.800 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma13g03098 PB1 2.1e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03098 - - gmx:100812210 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03098 13 45234191 45239938 Gma13g03098 13 45234191 45239938 ECH
Gma13g03098 13 45234191 45239938 Gma15g00266 15 2288704 2296720 GST
Gma13g03098 13 45234191 45239938 Gma12g00448 12 3655240 3659576 PCT
Gma13g03098 13 45234191 45239938 Gma11g01148 11 9655663 9660015 PCT
Gma12g00448 12 3655240 3659576 Gma13g03098 13 45234191 45239938 PCT
Gma11g01148 11 9655663 9660015 Gma13g03098 13 45234191 45239938 PCT