Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03090 ATGGACATAAGTCCTTACACTCCTCCAAAGAAGCTATCATCACATTCCACCATCCACTCCAATAACCATAACAACATCATTGCCGATGAGGCTACAACGTTAGATCATAACAACATCATGCACCGCAGCAACCACAGCCACACGTCCACGAGCCGTTCTTCTGACTCAGGTGAGCTTAGTGAAGTCGGAAAATGGGCCCCCAAACTTCTCAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCAACCAAAACACACCATCTTCTTTGGATGCTTAACGAGCTTGCTTCGCCTTATGGAGATTGTGATCAGAAACTCGCCTCTTATTTCTTGCAAGCCTTGTTCTGCAGAGCCACGGAGTCTGGTGAGAGATGCTATAAAACTCTTTCCTCCGTGGCTGAGAAGAACCACTCGTTTGACTCAGCGAGGAGGTTGATACTCAAGTTTCAAGAGGTAAGTCCCTGGACCACGTTCGGACATGTGGCCTCCAACGGGGCGCTTTTGGAGGCCTTGGAAGGCGAGCCAAAGCTCCACATCATCGACCTCAGCAGCACCCTTTGCACGCAGTGGCCAACACTCCTTGAAGCGTTGGCCACGCGAAATGATGAGACGCCTCATCTTAAACTCACAGTGGTGGCCATAGCTGGGTCGGTGATGAAAGAGGTTGGTCAACGGATGGAGAAGTTTGCAAGACTCATGGGCGTGCCCTTTGAATTCAACGTCATTAGTGGATTAAGCCAAATCACCAAAGAAGGCTTGGGGGTTCAAGAAGATGAGGCTATAGCTGTGAATTGCGTTGGGGCATTGAGAAGAGTCCAAGTTGAAGAGAGGGAAAACTTGATTCGTGTGTTTAAGTCTCTTGGTCCTAAAGTGGTAACCGTTGTTGAAGAAGAAGCTGATTTTTGCAGCTCGAGGGGGGATTTTTTTAAGTGCTTTGAAGAGTGTCTCAAGTTCTACACACTTTACTTCGAGATGTTGAAGGAGAGTTTCCCTCCAACGAGTAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCTTGTTGTGGTACTGGTCATGAGTTTGAAGATGATCATGGAGAGTTTGATTGCTGTGAGAGGAGGGAGAGAGGGATTCAGTGGTGTGAGAGGCTGAGGAATGCGTTTTCGCCAAGTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTCAAGAGGTACCAATCAGGGTGGTCACTTGTGGTGACTCAAGGAGATGAACATATCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTggtttgggcatcagcatggaaaccctag 1332 0.4692 MDISPYTPPKKLSSHSTIHSNNHNNIIADEATTLDHNNIMHRSNHSHTSTSRSSDSGELSEVGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGALLEALEGEPKLHIIDLSSTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVMKEVGQRMEKFARLMGVPFEFNVISGLSQITKEGLGVQEDEAIAVNCVGALRRVQVEERENLIRVFKSLGPKVVTVVEEEADFCSSRGDFFKCFEECLKFYTLYFEMLKESFPPTSNERLMLERECSRSIVRVLACCGTGHEFEDDHGEFDCCERRERGIQWCERLRNAFSPSGFSDDVVDDVKALLKRYQSGWSLVVTQGDEHISGIYLTWKEEPVVWASAWKP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03090 443 PANTHER PROTEIN SHORT-ROOT-LIKE 39 442 - -
Gma13g03090 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 442 IPR005202 -
Gma13g03090 443 Pfam GRAS domain family 68 442 IPR005202 -
Gma13g03090 443 ProSiteProfiles GRAS family profile. 57 442 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03090 Gma-Chr13 45177996 45179358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03090 41 443 GRAS Transcription Factor Family AT4G37650 50.820 1.89e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g03090 GRAS 1.1e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03090 - - gmx:100818806 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03090 13 45177996 45179358 Gma13g03090 13 45177996 45179358 ECH
Gma13g03090 13 45177996 45179358 Gma15g00272 15 2349980 2351463 GST
Gma07g00370 07 3295093 3297231 Gma13g03090 13 45177996 45179358 PCT
Gma16g00068 16 673936 675902 Gma13g03090 13 45177996 45179358 PCT