Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03086 ATGCCGCCTCCTTCCAAATTCGTGGAAGGCGAGGAGTTGGGAAGCCCCACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCATAGATTCCAATCTCATGGAACTATTCGCTCCGTACGGTTCTCTGGACTCACTCATCTCCTATTCCTCGCGCACCTTCGCTTTCGTCTTGTTCAGGCGCGTCGAAGACGCTAAGGCCGCAAAATCTAACTTGCAAGGCGCATGGCTCCGTGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGTAAACAATTGTGGGTGGGTGGTTTTAGTCCCGCTGTTGCGAGGGAAGATTTGGAAGCCGAGTTTTGGAAATTCGGTAAGATTGAGGATTTTAAGTTCTTTGTAGACCGCGGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTATTCGGGCCATGAAAGTCATGAACGGGAAGCGGTTAGGTGGAGGCCAGATTTGTGTAGACTTCCTTCGACCACAATCTACGAGAAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGACTAGACCACAGCATTTACAACCTTCAATTGGGAGGAATAGTCAACCCAGCAAAATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGATAAAATCAAGATTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCACTGATGAAGCTCAGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGAGCCGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGAGCCGATACGTGATGGATTAGTTAATGAGTATCCATTTCGACTGCAACAAACAGATGTATTTGGTCATAATCGTCCGATGGTTCCAAATAATTTTCCTGGACAATTGCCACCCGGACATAATGTCCCAATGGGACCTTTTGGTTCTCAAGGTCTTGAACCTCTTATTTCCGGTCCTGATTTTAATGAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCTGTGCCTGGTTCTGGTATTGGGCCTCCTACAAGATCCACCTCTGGTGCATGGGATGTACTTGGCATAAACCAATTTCAAAGAGATTCTAAACGTTCGAGGATACATGATGCTTGGCTCATTGGTGATGCTCCATTTCCTTTAAGGTATATAGATGACCGTGGATTAGGACTAGAACAACCATTTGCAATTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAACAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCTGGAGTACCTGATTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTTGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGAACTGAGATTCCTGGTGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGCTAAAGAAGCACTATGCTGATGCAATCGGCTTTGACATTGTTTTTTTTCTTCCTGATAGCGAAGAGGATTTTGCTTCATATACTGAATTCCTTCACTACCTCAAAGCAAAACATCGTGCTGGTATTGCCAAGTTAGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTATTGACCAAGGTTTTTAAAGTCACGGGACCTGAACGCTTATATGGTGTGGTTCTTAAATTTCCATCAGTTCCAAGTAGCACATATATGCAACAAGCAATGCATTTGCCTTCACCCTCTACTCAGTATATGCAACAGATTCCCCCTTCACAAGTTGAGTATGGTTCAATATCTGCAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTTCCAAAACCACTTCATCCGGCTACAAGTGTCCCCTCTTCATCTCATTCTGTTCCTTCTGATTATGCTCTTACTCATACTGCTTCTGTATCCCAAGCTGGAGTTACATGGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACTACACAATCATCAATCCCTGGCGGTCAAATGGGAATGGCTGGTCCCTCTACTGTGAAGTCACCTTTTCCTTCTGTTGCACCTAATAATGGAAATCAATCTCATTTGTGGAAACAAGATAAGCAAATTGCTGATCCTTCTAGTCATCCTCCTCAACAGTTTGGGAGTATTCATAATGCTCAATATCAACCTTATCCACCTGCATCTTCTACTGACAACCCTGCTCAAGTGGTCTCTGGCAGTTCTCGTTTCCAAGATACTGCTTCCAGTCTTAAGCAGCTAGGTGCTGTTTTGTCTACACCCATGACTAATTTCATCTTACCTCCTCAAAATGGACAGGTAGCTGTGTCCCTTCAAGTCAGTCAACAGTATCAGGAAGTCCCACACGGCACTGAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCGTTCCAACAACCTAATAATTTTATTTCCTCATCTAACCAAGTTGCCAATGCTGGATCACAGCAACAATCTGTGATACCCTATACAGTGGACAAAGTTAATTTAGGGCCCACAAATCAGCAACTCCAACCTGCGTTATTTGGAGTTGGCCAGGGAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGAAATCAACAATAAGAATTGTTTTCTACATTTCTCAGTTTCTTCTTCTGCTGATGGTGCTACTACTATGA 2817 0.4363 MPPPSKFVEGEELGSPTNNLWVGNLPPEVIDSNLMELFAPYGSLDSLISYSSRTFAFVLFRRVEDAKAAKSNLQGAWLRGFQIRIEFARPAKPCKQLWVGGFSPAVAREDLEAEFWKFGKIEDFKFFVDRGTACVEFLNLDDAIRAMKVMNGKRLGGGQICVDFLRPQSTRRDFLVDHGQFQTRPQHLQPSIGRNSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIDKIKIFPSRHYSFVEFRSTDEAQRAKEGLQGRLFNDPRITIMYSSSEPAPGKDYPGFYPGGKEPIRDGLVNEYPFRLQQTDVFGHNRPMVPNNFPGQLPPGHNVPMGPFGSQGLEPLISGPDFNEMGPSWKRPSPPAPGMLPSPVPGSGIGPPTRSTSGAWDVLGINQFQRDSKRSRIHDAWLIGDAPFPLRYIDDRGLGLEQPFAIDPVIDGGGSGPNSHLGPVGTRITSGVPDSVQPDIDHIWRGIIAKGGTPVCCARCVPIGKGIGTEIPGVVDCAARTGLDMLKKHYADAIGFDIVFFLPDSEEDFASYTEFLHYLKAKHRAGIAKLVDNTTLFLVPPSDLLTKVFKVTGPERLYGVVLKFPSVPSSTYMQQAMHLPSPSTQYMQQIPPSQVEYGSISAKEEQVLPMDYNRLLHEDSKHLPKPLHPATSVPSSSHSVPSDYALTHTASVSQAGVTWTPELIASLTSLLPATTQSSIPGGQMGMAGPSTVKSPFPSVAPNNGNQSHLWKQDKQIADPSSHPPQQFGSIHNAQYQPYPPASSTDNPAQVVSGSSRFQDTASSLKQLGAVLSTPMTNFILPPQNGQVAVSLQVSQQYQEVPHGTEKGYGVVQGTDASVLYSSKAFQQPNNFISSSNQVANAGSQQQSVIPYTVDKVNLGPTNQQLQPALFGVGQGVSELEADKNQRYQKSTIRIVFYISQFLLLLMVLLL 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03086 938 MobiDBLite consensus disorder prediction 704 782 - -
Gma13g03086 938 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Gma13g03086 938 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Gma13g03086 938 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Gma13g03086 938 Gene3D - 14 91 IPR012677 -
Gma13g03086 938 Pfam SPOC domain 466 583 IPR012921 -
Gma13g03086 938 Gene3D - 92 194 IPR012677 -
Gma13g03086 938 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Gma13g03086 938 CDD RRM3_Spen 97 166 - -
Gma13g03086 938 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Gma13g03086 938 SMART rrm1_1 201 269 IPR000504 GO:0003723
Gma13g03086 938 SMART rrm1_1 96 163 IPR000504 GO:0003723
Gma13g03086 938 SMART rrm1_1 19 86 IPR000504 GO:0003723
Gma13g03086 938 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Gma13g03086 938 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 9 917 - -
Gma13g03086 938 MobiDBLite consensus disorder prediction 723 782 - -
Gma13g03086 938 Gene3D - 195 277 IPR012677 -
Gma13g03086 938 CDD RRM3_Spen 20 89 - -
Gma13g03086 938 MobiDBLite consensus disorder prediction 649 669 - -
Gma13g03086 938 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
Gma13g03086 938 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 917 - -
Gma13g03086 938 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Gma13g03086 938 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03086 Gma-Chr13 45140447 45145927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03086 19 262 Eukaryotic Initiation Factors Gene Family AT2G36660 24.812 4.60e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03086 - - gmx:100810601 1841.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03086 13 45140447 45145927 Gma13g03086 13 45140447 45145927 ECH
Gma13g03086 13 45140447 45145927 Gma15g00276 15 2399252 2412943 GST
Gma13g03086 13 45140447 45145927 Gma12g00456 12 3731754 3743232 PCT
Gma13g03086 13 45140447 45145927 Gma11g01155 11 9730477 9741686 PCT
Gma12g00456 12 3731754 3743232 Gma13g03086 13 45140447 45145927 PCT
Gma11g01155 11 9730477 9741686 Gma13g03086 13 45140447 45145927 PCT