Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03080 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCGGCAACAGTGATTTGTTGTGCGGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAGCAAGCTTCCAAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCCGGAAGCCTTTCTGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCATCGAGTTCTAATTGCACCAAGGACAATGAAAAAAGTCACTTGGAGCCTCCTACTAGGAATGCACAACAAGTTTCTGCGAAAATTCCTCCTCAGCAAGTGCCTAGCTTCACTTCCTCTTGGGCTGTTGATGACTTATTGGAACTAACAGCCTTTGAATCACCTGAGAAAAAGGAATCTCTGCAGTTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTGCTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTCATAACAGTAGCAGTGTTGCTTCATACAGAACTTCCAAATCCTACATGTCCCACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGAGTATTTTACTGTGCCTGATCTTGGCTAA 720 0.4444 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHLEPPTRNAQQVSAKIPPQQVPSFTSSWAVDDLLELTAFESPEKKESLQFGELEWLTDVGIFGEQFAQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSHKKPRIEVLNDDDDEYFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03080 239 CDD Bbox1_BBX-like 57 98 - -
Gma13g03080 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Gma13g03080 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gma13g03080 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
Gma13g03080 239 Gene3D Classic Zinc Finger 1 92 - -
Gma13g03080 239 CDD Bbox1_BBX-like 5 47 - -
Gma13g03080 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gma13g03080 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma13g03080 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gma13g03080 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma13g03080 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03080 Gma-Chr13 45109700 45112534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03080 1 161 Orphan Transcription Factor Family AT1G06040 62.353 1.06e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma13g03080 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03080 - - gmx:100814727 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03080 13 45109700 45112534 Gma13g03080 13 45109700 45112534 ECH
Gma13g03080 13 45109700 45112534 Gma15g00281 15 2444162 2448090 GST
Gma13g03080 13 45109700 45112534 Gma12g00460 12 3772222 3776198 PCT
Gma13g03080 13 45109700 45112534 Gma11g01162 11 9782881 9785380 PCT
Gma12g00460 12 3772222 3776198 Gma13g03080 13 45109700 45112534 PCT
Gma11g01162 11 9782881 9785380 Gma13g03080 13 45109700 45112534 PCT