Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03076 ATGTCTTCCATTGCCGTCTCTTATGGCGACAAAGGGTCAGTATTTTGTGGCTTGAAATCAGATGGATCTCACACTGTGACCTGTTATGGAATAGACTCAGCCATAATTTATGGAACGCCAACGCATTTTCCATTCCTTGGTCTAACTGCTGGTGATGGCTTTGTGTGTGGGCTTTTAATGAGTTCTAACCAACCTTATTGTTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAGCCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCTGGTGACTACCACGTTTGTGGATTGAGGAAACCATTGACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACCAACAACTATGTGTTTGATGGGCAGGTTCAATCAATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCTCAGAATAGGACTGTGTTCTGTTGGGGGGATGAGACTAGTAGCCAAGTTATTAGCATGATCCCTCAAGGCATGAGGTTCCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTAGAAGGGGTGAATTCTAGAGCTGTTTGCTGGGGGAGGAGCTTGTTGGATTTGGGGGAAGAGCTTTCAATTTCGTTGACGGGTTCGGGGCAAGGACAAGGTAATGTTGAATTGGCTCCAATTGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAGGAGCTATGATCGTGGTGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGTACTCCAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTATTTCACCTGTGGAGTACTTGTTGAGAAATCTCTTATGCCTGTTTGTTGGGGTGTTGGCTTCCCTACCTCTCTCCCTTTGCCTGTTTCACCAAGAATGTGTAGGTCTACTCCATGTTCTCCAGGTTACTATGAAACCCAACAAAATGGTCTTTGCAAGTCCCCAGATTCTCACATTTGCATGCCTTGCAGTGCTGCTTGTCCTCCTGAGATGTATCAGAGAAGTGGATGCAATTTGAAATCTGACATACTGTGTGAATATAATTGTTCTATTTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTTTGGCAAGAGAACTGAAAGATTCTGGTCTATGCAGCTGCCAGTGCTTATTGCTGAGATAGCCTTTGCTGTTTTCTTAGTTAGCATTGTGTCTATAACTGCTGTTTTGTATGTTCGCTACAAGCTAAGAAATTGTCAGTGTTCAGGGCCAAAGGTGAAGAAACTAAAAGGGAGCTCTATAAACCAAAAGGATCAGAAATGCAAGATCCGACCGGACTTGGAGGATTTCAAGATTAGGAGGGCACAGATGTTCCCCTACGAGGAGCTTGAAAGGGCAACTAGTGGATTCAAAGAAGAGTCCATAGTGGGGAAGGGAAGTTTTTCATGTGTGTTCAAAGGAGTTCTCAAAGATGGTACTGTTGTTGCTGTTAAAAGGGCCATAGTGTCTCCCAACATGCAGAAGAATTCCAAGGAGTTTCACACCGAGCTTGACTTGCTCTCTAGGTTGAACCATGCACACTTGCTCAATCTACTAGGCTACTGTGAAGAAGGTGGAGAGAGGCTCCTTGTTTATGAGTACATGGCTCATGGCTCTTTGCATCAACACCTACATGGCAACAAGGTGATGCAAGAGCAAATGGATTGGGTGAGAAGGGTAACAATTGCAGTGCAAGCAGCTCGCggaatcgaatatttgcatggatatgcttgtccacccgtgattcacagagacatcaagtcttcaaacatcctcatagatgaagaacacaatgctagagtggctgattttggtttgtcactacttggtcctgcagatagtagctccccactagctgaactaccagctgggactcttggctatcttgatcctgaatactataggcttcattatcttaccacaaagtctgatgtatatagctttggtgttctacttttggagattttaagtggtagaaaAGCCATTGACATGCAATTTGAAGAAGGGAACATAGTTCAATGGGCAGTGCCTCTGATCAAGTCAGGAGATATAGCTGCAATTTTGGATCCAGTTTTGAAACCTCCTCCTGATCTTGATGCCTTGAGAAGGATAGCTAATGTGGCTTGTAAAAGTGTGAGAATGAGAGGTAAGGATAGGCCTTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCACTTGCACAGTTAATGGGGAGCCCTTGTATTGAGCAGCCAATTTTGCCCACTGAGGTGGTTTTGGGAAGTAACAGATTGCACAAGAAATCATCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAGGATCAGAGGTTTGAGTTTAGAGCACCATCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAAAGAAGATCGGGCTCGGAGGCCGAAGTCGAGGGGAAAAATGCAGAAGGAAGGAATTTGAGCAATGTTGGAGGAGGTGGTGGTGTTTTGAGAAGTCTTGATGAAGAGATTGGTCTTGCCTCTCCTCGAGAGAGATTGTTCTTGCAACACAACTTTTAA 2616 0.4052 MSSIAVSYGDKGSVFCGLKSDGSHTVTCYGIDSAIIYGTPTHFPFLGLTAGDGFVCGLLMSSNQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQSISAGSQFNCGLFSQNRTVFCWGDETSSQVISMIPQGMRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTGSGQGQGNVELAPIDPMLSVVGGKFHACGIRSYDRGVVCWGYSFKAGTPVPSGIKAFEIGAGNYFTCGVLVEKSLMPVCWGVGFPTSLPLPVSPRMCRSTPCSPGYYETQQNGLCKSPDSHICMPCSAACPPEMYQRSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAAFGKRTERFWSMQLPVLIAEIAFAVFLVSIVSITAVLYVRYKLRNCQCSGPKVKKLKGSSINQKDQKCKIRPDLEDFKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMQEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVQWAVPLIKSGDIAAILDPVLKPPPDLDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEAEVEGKNAEGRNLSNVGGGGGVLRSLDEEIGLASPRERLFLQHNF 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03076 871 MobiDBLite consensus disorder prediction 816 846 - -
Gma13g03076 871 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 871 - -
Gma13g03076 871 SUPERFAMILY Protein kinase-like (PK-like) 464 753 IPR011009 -
Gma13g03076 871 SUPERFAMILY RCC1/BLIP-II 221 308 IPR009091 -
Gma13g03076 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Gma13g03076 871 SUPERFAMILY RCC1/BLIP-II 5 200 IPR009091 -
Gma13g03076 871 SMART serkin_6 481 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03076 871 Pfam Protein kinase domain 481 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03076 871 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 314 361 IPR001368 GO:0005515
Gma13g03076 871 PANTHER RECEPTOR-LIKE KINASE 1 871 - -
Gma13g03076 871 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Gma13g03076 871 Pfam Regulator of chromosome condensation (RCC1) repeat 132 162 - -
Gma13g03076 871 Gene3D - 44 312 IPR009091 -
Gma13g03076 871 Gene3D Transferase(Phosphotransferase) domain 1 559 763 - -
Gma13g03076 871 ProSiteProfiles Protein kinase domain profile. 481 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03076 871 Gene3D Phosphorylase Kinase; domain 1 451 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03076 Gma-Chr13 45087844 45090459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03076 1 871 Receptor kinase-like Gene Family AT3G59420 68.249 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma13g03076 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03076 - - gmx:100807392 1727.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03076 13 45087844 45090459 Gma15g00286 15 2470053 2472761 GST
Gma12g00466 12 3814789 3817542 Gma13g03076 13 45087844 45090459 PCT
Gma11g01167 11 9827114 9829864 Gma13g03076 13 45087844 45090459 PCT