Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03065 ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTGGAGTCCCTTGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCATGGATTACTACAGTGACTACGACGACGAAGCTGACGATTACTTCGACGATGCTGACGATTCTGACCGGGTTGAGTCTCGCCGCCCTGAGCAAAACTTTACAATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAGGATGACATAGCTAGAGTAGCGGCAGTTCTTTCCATACCGCGGGTTTCTGCGAGCATCCTACTTCGTCACTACAACTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGGAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATACTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTGCACGGGTTGAATCTGCTGCTTGTGGCCACCCTTACTGCTATTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAACCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTCAGATCTTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTTGACTGTGGCACTGTTTCAAAGTGGATTTTGAAAAATAGTGCTGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCTCCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATTCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTGAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGCACTAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTGGCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTATTCGAACTATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCACTGTACCTATGCCAATGTTAAGTCTGCCACCACATGTCAAATGTGCAATCAACAGCGTCGATGA 1770 0.4429 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRVESRRPEQNFTILRELDIRQRQEDDIARVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNTRELTCGICFEMYPRARVESAACGHPYCYSCWAGYIGTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTISSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03065 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Gma13g03065 589 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Gma13g03065 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Gma13g03065 589 MobiDBLite consensus disorder prediction 523 540 - -
Gma13g03065 589 MobiDBLite consensus disorder prediction 1 48 - -
Gma13g03065 589 MobiDBLite consensus disorder prediction 523 550 - -
Gma13g03065 589 ProSiteProfiles Zinc finger RanBP2 type profile. 561 589 IPR001876 -
Gma13g03065 589 SMART zf_4 563 587 IPR001876 -
Gma13g03065 589 Pfam Ariadne domain 357 519 IPR045840 -
Gma13g03065 589 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Gma13g03065 589 SUPERFAMILY Ran binding protein zinc finger-like 561 588 IPR036443 -
Gma13g03065 589 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Gma13g03065 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Gma13g03065 589 MobiDBLite consensus disorder prediction 1 58 - -
Gma13g03065 589 Gene3D - 559 589 - -
Gma13g03065 589 SUPERFAMILY RING/U-box 208 277 - -
Gma13g03065 589 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Gma13g03065 589 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Gma13g03065 589 SMART ibrneu5 283 344 IPR002867 -
Gma13g03065 589 SMART ibrneu5 208 270 IPR002867 -
Gma13g03065 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Gma13g03065 589 Gene3D - 266 521 - -
Gma13g03065 589 SUPERFAMILY RING/U-box 134 220 - -
Gma13g03065 589 SUPERFAMILY RING/U-box 289 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03065 Gma-Chr13 45011289 45020024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03065 17 588 ARIADNE family AT1G65430 70.326 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03065 K11968 - gmx:100810427 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03065 13 45011289 45020024 Gma13g03065 13 45011289 45020024 ECH
Gma13g03065 13 45011289 45020024 Gma15g00296 15 2556925 2564258 GST
Gma13g03065 13 45011289 45020024 Gma12g00480 12 3906571 3914025 PCT
Gma13g03065 13 45011289 45020024 Gma11g01178 11 9923763 9931868 PCT
Gma12g00480 12 3906571 3914025 Gma13g03065 13 45011289 45020024 PCT
Gma11g01178 11 9923763 9931868 Gma13g03065 13 45011289 45020024 PCT