Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03052 ATGGAGTCAGATCTCGAGCAACAGCCGCAGGTGAATTCCTCGGGTTTAACTCGGTACCGATCGGCGCCGAGTTCTTATTTCTCGAACATCATTGACCGCGAGTTCTACGAGCACGTCTTCAACCGTCCCTCGAGTCCCGAAACGGAGCGAGTGTTCTCACGCTTCATGAACAGCTTAAACAGTGAAGAAGAAGATTCGCTCCATCATCACAAGCTCTCAACTGATTCTTCTTCTTCTTCTGCGGCGGTTAAGGAAGAGGTTGTTAACCAACATGACCAGAGCGTCAACGAGGAACACGTGGTGGTGGCGGCGCTACAGCAGAGTAATAATAACATGAATAGTTATAACAACTCTGCTTCTCGTAATTTCTACCAAAGCTCCTCCTCCAAACCTCCCTTGCCGAACCCGAACCCGAACCTGTCCTCAGGTATGGAACAAGGATCGTTTTCAATGGGACTCAGGCATAGTGGAAATAACTCTAACCTTATCAGGCATAGCAGCTCACCCGCAGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTGGTGTGAGAGGCATGGGGACTTTGGGGGCTGTTAATAACAGTATCGAAGATGCAAAATTTTCTAGTTCGAGAAGGTTGAAGAAtcaaccgaactattcttcgtcggggagaatgtcgtccattgctgaaattggggacaaagggaatggagaaagtagtccagacaatgaagcttttgctgatggtaacgattttatcaccggtttccaagttggtcattgggatgatgctgcaatcatgtctgacaacgttggtggtctcaaaagatttagagaaaacgattcaaaaccattttctggcttaaatgcggctgagactcagAATGAAACAGGACAGACTCATGCTCCTTTGGCCCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCTGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATCCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAAGATCTTGTCCCAAACATGGACAAGCAAACTAACACAGCTGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGACGCTTTCAGATTGTCATGCAAAGTGTACGTGTTCACACGAGAAGCAACAATAA 1227 0.3708 MESDLEQQPQVNSSGLTRYRSAPSSYFSNIIDREFYEHVFNRPSSPETERVFSRFMNSLNSEEEDSLHHHKLSTDSSSSSAAVKEEVVNQHDQSVNEEHVVVAALQQSNNNMNSYNNSASRNFYQSSSSKPPLPNPNPNLSSGMEQGSFSMGLRHSGNNSNLIRHSSSPAGLFSQINIENVYAGVRGMGTLGAVNNSIEDAKFSSSRRLKNQPNYSSSGRMSSIAEIGDKGNGESSPDNEAFADGNDFITGFQVGHWDDAAIMSDNVGGLKRFRENDSKPFSGLNAAETQNETGQTHAPLAHQLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDCHAKCTCSHEKQQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03052 408 Gene3D - 337 407 IPR036638 GO:0046983
Gma13g03052 408 MobiDBLite consensus disorder prediction 63 83 - -
Gma13g03052 408 MobiDBLite consensus disorder prediction 202 222 - -
Gma13g03052 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 400 IPR036638 GO:0046983
Gma13g03052 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Gma13g03052 408 SMART finulus 342 392 IPR011598 GO:0046983
Gma13g03052 408 Pfam Helix-loop-helix DNA-binding domain 341 387 IPR011598 GO:0046983
Gma13g03052 408 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 405 - -
Gma13g03052 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03052 Gma-Chr13 44886022 44889226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03052 7 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.741 4.57e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g03052 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03052 - - gmx:100805812 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03052 13 44886022 44889226 Gma13g03052 13 44886022 44889226 ECH
Gma13g03052 13 44886022 44889226 Gma15g00309 15 2686442 2689889 ECH
Gma03g01302 03 39201065 39204811 Gma13g03052 13 44886022 44889226 ECH
Gma19g01359 19 42912228 42915776 Gma13g03052 13 44886022 44889226 ECH
Gma10g00858 10 13400181 13403280 Gma13g03052 13 44886022 44889226 ECH