Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03049 ATGGCGGAGGAGCTGAAGCTGGACAACCTTAAAGCAGTGAAAGTGTTAGGCAAAGGAGGCATGGGCACCGTGTTCCTGGTCCAACTAGAAAACAACAACTCCCACGTGGCACTGAAAGTCGTAGACAAATCATCCTCCCACCACGACGCTCCTCGACGCGCCCGCTGGGAAATGAACGTCCTCTCTCGCTTATCCCATTCGCACCCCTTCCTCCCTTCCTTATTGGGCTCATTCCACTCCCAAAACTTAATGGGCTGGGCCGTCCCTTACTGCCCCGGCGGCGACCTCAACGCCCTCCGCTACCGCCAAACTGATCACGTCTTCTCCCCCGCCGTCATCCGCTTCTATGTCGCCGAGATCCTCTGCGCTCTCCAACACCTCCATTCCATGAACATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAGCAATCCGGACACGTCACCCTCACCGACTTCGACCTCTCCCGTACCCTCTCTCCCTCCGTTAATATTCCCTCCAACACCACTACTCCTCCTCCTTCCCGCAAACACCGCCGCTGGGTCCCACTCCCACTCCCACTCCACGCTAAAAACAAAAACCCCAAGCCCGCCCGAGTCAGCCCGGTCAACCGACGCAAACTCAGTTTCGTGCGATCCAACTCCTTCGTCGGCACCGAGGAGTACATCGCGCCTGAGGTCCTCCGCGCCGAGGGGCACGATTTCTCCGTCGACTGGTGGGCCCTCGGAGTTCTGACCTACGAGATGCTCTACGGAACGACGCCGTTCAAGGGGACGAATCGCAAGGAGACGTTTCGAAACGTGTTGTTCAAGCCGCCGGAGTTTGTGGGGAAGAAAACGGAGTTGACGGACCTCATCATGGGCTTGCTCGAAAAGGACCCCACCAAGCGTTTGGGTTACGTTCGAGGCGCTAGTGAGATCAAGGAGCATCAGTTCTTTAGAGGGGTTAAGTGGGACCTACTAACGGAGGTTCTGCGCCCGCCGTTTATTCCGTCGAGAGACGACGTCGACGCAACAACGACCAAGTCTTTCGCTGCGGGACTTGACATAAAGGGATACTTTCAGAGCTTAAAATCACCGCCGTCGCTGCCCCCTTCGCCGTTACGCTCACCGTCCTTTGAGTTTCAGAATAATGTTTCTTTACCGGAATTCTGA 1161 0.5659 MAEELKLDNLKAVKVLGKGGMGTVFLVQLENNNSHVALKVVDKSSSHHDAPRRARWEMNVLSRLSHSHPFLPSLLGSFHSQNLMGWAVPYCPGGDLNALRYRQTDHVFSPAVIRFYVAEILCALQHLHSMNIAYRDLKPENVLIQQSGHVTLTDFDLSRTLSPSVNIPSNTTTPPPSRKHRRWVPLPLPLHAKNKNPKPARVSPVNRRKLSFVRSNSFVGTEEYIAPEVLRAEGHDFSVDWWALGVLTYEMLYGTTPFKGTNRKETFRNVLFKPPEFVGKKTELTDLIMGLLEKDPTKRLGYVRGASEIKEHQFFRGVKWDLLTEVLRPPFIPSRDDVDATTTKSFAAGLDIKGYFQSLKSPPSLPPSPLRSPSFEFQNNVSLPEF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03049 386 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Gma13g03049 386 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 5 363 - -
Gma13g03049 386 SUPERFAMILY Protein kinase-like (PK-like) 7 368 IPR011009 -
Gma13g03049 386 Gene3D Transferase(Phosphotransferase) domain 1 95 163 - -
Gma13g03049 386 Gene3D Transferase(Phosphotransferase) domain 1 213 334 - -
Gma13g03049 386 PANTHER FLIPPASE KINASE 1-RELATED 5 363 - -
Gma13g03049 386 SMART serkin_6 10 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03049 386 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Gma13g03049 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gma13g03049 386 ProSiteProfiles AGC-kinase C-terminal domain profile. 316 386 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gma13g03049 386 ProSiteProfiles Protein kinase domain profile. 10 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03049 386 Pfam Protein kinase domain 12 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03049 386 Pfam Protein kinase domain 215 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03049 Gma-Chr13 44854120 44855654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03049 3 386 AGC Kinase Gene Family AT3G20830 58.663 7.30e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma13g03049 Pkinase 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03049 - K08286 gmx:100802613 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03049 13 44854120 44855654 Gma13g03049 13 44854120 44855654 ECH
Gma13g03049 13 44854120 44855654 Gma12g00498 12 4145000 4146456 PCT
Gma13g03049 13 44854120 44855654 Gma11g01197 11 10210714 10212178 PCT
Gma12g00498 12 4145000 4146456 Gma13g03049 13 44854120 44855654 PCT
Gma11g01197 11 10210714 10212178 Gma13g03049 13 44854120 44855654 PCT