Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03046 ATGATGCTGAAGCAGGAGCAGGCAAAGCTTGTAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAACCTGTCGTTGCTACCAGTGTGGATGTTTCAGTCAATTCAGTAGAGTCTAAAATTATCTCTGCTCAACCTTTAGTTGCTTCAGGTTCAGACGAGAGTGATGAGGCGAAGCCCAAGGATGGTCCAAAACGATGCAGCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGCGGTAACCTTTTCTGTTCTGAACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTATCGCACTGCTGCAAGGGATGCCATAGCTAAAGCAAATCCAACTGTCAAGGCTGAGAAACTTGTTAAGATCTAG 399 0.4411 MMLKQEQAKLVASSIGNIMNGSSSSSGNEPVVATSVDVSVNSVESKIISAQPLVASGSDESDEAKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCSEHRYSDKHNCPFDYRTAARDAIAKANPTVKAEKLVKI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03046 132 ProSiteProfiles Zinc finger AN1-type profile. 67 113 IPR000058 GO:0008270
Gma13g03046 132 SMART AN1_Zf_4 73 110 IPR000058 GO:0008270
Gma13g03046 132 Gene3D - 45 128 IPR035896 -
Gma13g03046 132 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 132 - -
Gma13g03046 132 Pfam AN1-like Zinc finger 73 109 IPR000058 GO:0008270
Gma13g03046 132 SUPERFAMILY AN1-like Zinc finger 57 127 IPR035896 -
Gma13g03046 132 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 132 - -
Gma13g03046 132 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03046 Gma-Chr13 44833648 44834046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03046 61 132 C2H2 Transcription Factor Family AT3G52800 55.556 5.15e-26 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03046 - - gmx:100802969 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03046 13 44833648 44834046 Gma13g03046 13 44833648 44834046 ECH
Gma13g03046 13 44833648 44834046 Gma15g00316 15 2730997 2733338 ECH
Gma03g01294 03 39078968 39079390 Gma13g03046 13 44833648 44834046 ECH
Gma19g01349 19 42787844 42790454 Gma13g03046 13 44833648 44834046 ECH