Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03043 ATGACTCATCCCTACTGCTCTAATGACTTGAATGCTTGGTTTGACCTCAATTCTCCATGCCTTTTTTCCAATTCTTCATCACCTTGCTCCAATAACCCACCATTCTACTTTCCTACTACTAATATTAGTTACCGTCATAACTGCACAAATAATGGCATCTCTTTTACTCAGCATATTCAATCTTCTCCCAGCTCCTTTCCTCCTCCAAAAGAAGCACTTACTCTCCTTAACCTAAGCCCCGCAAGAGGTGAAGATCTTGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAAAGAGAAGGAGAAAGAATTACTAAGCATCATGTCTTCTAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACTGCTACTTCATCAGCTGATTTAACTTCAAACATGTACTCAGAAAAAGAAGAAAAAGCCACTTTTGCTTCTGAGTATTCTCCGACTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATCGGTCCAACACGGTTCTCATGCCCCCTTTGTTGCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTGCACAAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGGACCCTCCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACTCACGAGAAAAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAGAGATCTCTCAAAGATCATATCAAGGCATTTGGGAATGGACATAGAGCTTATGGAATCGACTCATGTCTTGATCAAGATGATGAACCGGGCTCAGAAATTGAGCAGGAAAATAATGAATCTTTAATTTCCAATCATAGTTGA 1053 0.4188 MTHPYCSNDLNAWFDLNSPCLFSNSSSPCSNNPPFYFPTTNISYRHNCTNNGISFTQHIQSSPSSFPPPKEALTLLNLSPARGEDLDLESSFSAMKVNKEKEKELLSIMSSNNNSLDDETVTVALHLGLPSTTATSSADLTSNMYSEKEEKATFASEYSPTRINKGQYWIPTPAQILIGPTRFSCPLCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRAYGIDSCLDQDDEPGSEIEQENNESLISNHS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03043 350 Gene3D Classic Zinc Finger 226 316 - -
Gma13g03043 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Gma13g03043 350 PANTHER ZINC FINGER PROTEIN WIP2 1 343 IPR043584 GO:0003700|GO:0010468
Gma13g03043 350 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 343 - -
Gma13g03043 350 MobiDBLite consensus disorder prediction 331 350 - -
Gma13g03043 350 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Gma13g03043 350 SUPERFAMILY beta-beta-alpha zinc fingers 249 287 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03043 Gma-Chr13 44817029 44819284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03043 70 343 C2H2 Transcription Factor Family AT3G57670 61.415 4.09e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g03043 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03043 - - gmx:100801922 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03043 13 44817029 44819284 Gma13g03043 13 44817029 44819284 ECH
Gma13g03043 13 44817029 44819284 Gma15g00318 15 2744930 2747071 ECH
Gma03g01291 03 39021640 39024510 Gma13g03043 13 44817029 44819284 ECH
Gma19g01345 19 42731793 42734337 Gma13g03043 13 44817029 44819284 ECH
Gma10g00884 10 14077096 14079561 Gma13g03043 13 44817029 44819284 ECH
Gma02g01696 02 36133987 36136293 Gma13g03043 13 44817029 44819284 ECH
Gma13g03043 13 44817029 44819284 Gma15g00318 15 2744930 2747071 GST
Gma13g03043 13 44817029 44819284 Gma12g00506 12 4224816 4227306 PCT
Gma13g03043 13 44817029 44819284 Gma11g01205 11 10282018 10284511 PCT
Gma12g00506 12 4224816 4227306 Gma13g03043 13 44817029 44819284 PCT
Gma11g01205 11 10282018 10284511 Gma13g03043 13 44817029 44819284 PCT