Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma13g03043 | ATGACTCATCCCTACTGCTCTAATGACTTGAATGCTTGGTTTGACCTCAATTCTCCATGCCTTTTTTCCAATTCTTCATCACCTTGCTCCAATAACCCACCATTCTACTTTCCTACTACTAATATTAGTTACCGTCATAACTGCACAAATAATGGCATCTCTTTTACTCAGCATATTCAATCTTCTCCCAGCTCCTTTCCTCCTCCAAAAGAAGCACTTACTCTCCTTAACCTAAGCCCCGCAAGAGGTGAAGATCTTGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAAAGAGAAGGAGAAAGAATTACTAAGCATCATGTCTTCTAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACTGCTACTTCATCAGCTGATTTAACTTCAAACATGTACTCAGAAAAAGAAGAAAAAGCCACTTTTGCTTCTGAGTATTCTCCGACTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATCGGTCCAACACGGTTCTCATGCCCCCTTTGTTGCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTGCACAAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGGACCCTCCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACTCACGAGAAAAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAGAGATCTCTCAAAGATCATATCAAGGCATTTGGGAATGGACATAGAGCTTATGGAATCGACTCATGTCTTGATCAAGATGATGAACCGGGCTCAGAAATTGAGCAGGAAAATAATGAATCTTTAATTTCCAATCATAGTTGA | 1053 | 0.4188 | MTHPYCSNDLNAWFDLNSPCLFSNSSSPCSNNPPFYFPTTNISYRHNCTNNGISFTQHIQSSPSSFPPPKEALTLLNLSPARGEDLDLESSFSAMKVNKEKEKELLSIMSSNNNSLDDETVTVALHLGLPSTTATSSADLTSNMYSEKEEKATFASEYSPTRINKGQYWIPTPAQILIGPTRFSCPLCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRAYGIDSCLDQDDEPGSEIEQENNESLISNHS | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma13g03043 | 350 | Gene3D | Classic Zinc Finger | 226 | 316 | - | - | |
Gma13g03043 | 350 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 183 | 210 | IPR013087 | - | |
Gma13g03043 | 350 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 343 | IPR043584 | GO:0003700|GO:0010468 | |
Gma13g03043 | 350 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 343 | - | - | |
Gma13g03043 | 350 | MobiDBLite | consensus disorder prediction | 331 | 350 | - | - | |
Gma13g03043 | 350 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 185 | 205 | IPR013087 | - | |
Gma13g03043 | 350 | SUPERFAMILY | beta-beta-alpha zinc fingers | 249 | 287 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma13g03043 | Gma-Chr13 | 44817029 | 44819284 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma13g03043 | 70 | 343 | C2H2 Transcription Factor Family | AT3G57670 | 61.415 | 4.09e-127 | 368 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gma13g03043 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma13g03043 | - | - | gmx:100801922 | 712.22 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma13g03043 | 13 | 44817029 | 44819284 | Gma13g03043 | 13 | 44817029 | 44819284 | ECH | |
Gma13g03043 | 13 | 44817029 | 44819284 | Gma15g00318 | 15 | 2744930 | 2747071 | ECH | |
Gma03g01291 | 03 | 39021640 | 39024510 | Gma13g03043 | 13 | 44817029 | 44819284 | ECH | |
Gma19g01345 | 19 | 42731793 | 42734337 | Gma13g03043 | 13 | 44817029 | 44819284 | ECH | |
Gma10g00884 | 10 | 14077096 | 14079561 | Gma13g03043 | 13 | 44817029 | 44819284 | ECH | |
Gma02g01696 | 02 | 36133987 | 36136293 | Gma13g03043 | 13 | 44817029 | 44819284 | ECH | |
Gma13g03043 | 13 | 44817029 | 44819284 | Gma15g00318 | 15 | 2744930 | 2747071 | GST | |
Gma13g03043 | 13 | 44817029 | 44819284 | Gma12g00506 | 12 | 4224816 | 4227306 | PCT | |
Gma13g03043 | 13 | 44817029 | 44819284 | Gma11g01205 | 11 | 10282018 | 10284511 | PCT | |
Gma12g00506 | 12 | 4224816 | 4227306 | Gma13g03043 | 13 | 44817029 | 44819284 | PCT | |
Gma11g01205 | 11 | 10282018 | 10284511 | Gma13g03043 | 13 | 44817029 | 44819284 | PCT |