Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03037 ATGGCGAGCTACCAGCAGGCATCAACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTACAATACTGGGTGGACGAAGGGTACCTGAGCCACTGCTTCGGCCACACGGGAGAAGTAATATCCATCAAAATCATCCGCAACAAGCTCACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTATCCCACGCCGCAGCCGAGAGGGTTCTCCAGACCTACAACGGCACCCAAATGCCCGCCACTGACCAGACCTTCAGGCTCAACTGGGCCTCCTTCGGCATTGGTGAGCGCAGGCCCGATGCCGCCCCTGAACACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTAACCGATTACCTTCTCCAGGAAACTTTTCGCGCTCACTACCCTTCCGTTCGCGGCGCCAAAGTTGTCACCGACCCCAACACCGCCCGCTCCAAGGGTTACGGCTTCGTTAAGTTTTCTGATGAGAATGAACGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGTATTAGTGCTGCTACGCCCAAGAAAACCACCGGTGCTTATGCTGCACCCGCCGCGCCTGTGCCCAAACCTGTGTATCCGGTTCCGGCCTATACTTCGCCTGTTGTTCAAGTTCAACCACCTGACTATGATGTCAATAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTCTCTGCAATTTGGGGAAATTGTTTCTGTCAAAATTCAGCCTGGCAAGGGATTTGGTTTTGTTCAATTTGGGACCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTACGGATTTCTTGGGGTAGGACTCTAACAGCTAGACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGCCTGCTCATGATCCTTCATTGTATGCATATGGTGCATATCCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCATTGGCAATGCCCGATGTTGATAAATTAAATGCTGCATACCTCTCAGTACATGGAAGTGCCATTTTAGGACGGTCGCTTTGGCAAAAAACCTGTTCGTCATCCTTACAGCAAGCTTAA 1233 0.5101 MASYQQASTIEEVRTLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPATDQTFRLNWASFGIGERRPDAAPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTTIFVGNLDLNVSEEELKQNSLQFGEIVSVKIQPGKGFGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLTARQMDPNQWSAYYGYGQGYEAYAYGPAHDPSLYAYGAYPGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTCSSSLQQA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03037 410 SUPERFAMILY RNA-binding domain, RBD 13 188 IPR035979 GO:0003676
Gma13g03037 410 CDD RRM1_SECp43_like 15 95 - -
Gma13g03037 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Gma13g03037 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 292 IPR000504 GO:0003723
Gma13g03037 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 80 IPR000504 GO:0003723
Gma13g03037 410 Gene3D - 13 93 IPR012677 -
Gma13g03037 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 348 - -
Gma13g03037 410 Gene3D - 95 195 IPR012677 -
Gma13g03037 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 186 IPR000504 GO:0003723
Gma13g03037 410 Gene3D - 215 304 IPR012677 -
Gma13g03037 410 CDD RRM2_SECp43_like 106 185 - -
Gma13g03037 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 94 IPR000504 GO:0003723
Gma13g03037 410 SUPERFAMILY RNA-binding domain, RBD 208 321 IPR035979 GO:0003676
Gma13g03037 410 SMART rrm1_1 228 295 IPR000504 GO:0003723
Gma13g03037 410 SMART rrm1_1 15 90 IPR000504 GO:0003723
Gma13g03037 410 SMART rrm1_1 108 182 IPR000504 GO:0003723
Gma13g03037 410 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 348 - -
Gma13g03037 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03037 Gma-Chr13 44762009 44764817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03037 108 294 Eukaryotic Initiation Factors Gene Family AT4G34110 28.646 1.59e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03037 - - gmx:100799421 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03037 13 44762009 44764817 Gma13g03037 13 44762009 44764817 ECH
Gma13g03037 13 44762009 44764817 Gma15g00323 15 2797736 2800083 GST
Gma13g03037 13 44762009 44764817 Gma12g00508 12 4252402 4255740 PCT
Gma13g03037 13 44762009 44764817 Gma11g01207 11 10317114 10320607 PCT
Gma12g00508 12 4252402 4255740 Gma13g03037 13 44762009 44764817 PCT
Gma11g01207 11 10317114 10320607 Gma13g03037 13 44762009 44764817 PCT