Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03022 ATGAGGGAACAAAGTTTTGGAGATAAGATGCATGGAATAACAACTCTCGCTCTCACTGCAACTGCAAACACAAACACATTCCTTTCTTGTCCTCTAAGATCTCTTCTACCACTTACCCCTCCATCGAATTGTTGCATACCCACTTGTAAATTTAGCTATGGAATTCGTTTCAACCATTCTCAGTGGAAGCACCAAAAAACAGAAAGATGGAGCAACAGAAATAGAACGATGGTTGTGAGAGCAAGGCGTAGCGAGTCTCCGTATGAAGTTTTGGGCGTGTCTCCATCCGCAACCGTCGACCAAATAAAAAAGGCCTATCGGAAACTTGCTCTCAAGTATCATCCCGATGTCAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGATCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAACTAGGAATATACAAGCTGAAGAAGAGTTTTATGGACTAGGTAATTTTTTGAGGGATGTTCAAATAACAATTGGTAGATATATACTCTCTGAGGACTTCTTTAAGGATCTTCAACAAGAATTCAGGAACTGGGAAGCAAACACTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACTGATCAAAATGATGATTATAAAACGCCTCAGGGAGGCAACACATCGAACTTTCCTGGGACAGAGACACCAAGCAATAGCAGTCAAGGTCAAGCTGGCAAGGGAAGCAGAGGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAACTAGGCTTATAG 894 0.4128 MREQSFGDKMHGITTLALTATANTNTFLSCPLRSLLPLTPPSNCCIPTCKFSYGIRFNHSQWKHQKTERWSNRNRTMVVRARRSESPYEVLGVSPSATVDQIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSRSRKKYDSGSRGYDFSQGSRTRNIQAEEEFYGLGNFLRDVQITIGRYILSEDFFKDLQQEFRNWEANTASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTPQGGNTSNFPGTETPSNSSQGQAGKGSRGVEDNLEEIEATLAQLKKELGL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03022 297 Coils Coil 274 294 - -
Gma13g03022 297 CDD DnaJ 87 139 IPR001623 -
Gma13g03022 297 MobiDBLite consensus disorder prediction 239 281 - -
Gma13g03022 297 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Gma13g03022 297 Gene3D DnaJ domain 83 215 IPR036869 -
Gma13g03022 297 Pfam DnaJ domain 87 147 IPR001623 -
Gma13g03022 297 ProSiteProfiles dnaJ domain profile. 86 150 IPR001623 -
Gma13g03022 297 SMART dnaj_3 85 142 IPR001623 -
Gma13g03022 297 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 58 295 - -
Gma13g03022 297 MobiDBLite consensus disorder prediction 242 273 - -
Gma13g03022 297 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 58 295 - -
Gma13g03022 297 SUPERFAMILY Chaperone J-domain 42 146 IPR036869 -
Gma13g03022 297 PRINTS DnaJ domain signature 88 106 IPR001623 -
Gma13g03022 297 PRINTS DnaJ domain signature 106 121 IPR001623 -
Gma13g03022 297 PRINTS DnaJ domain signature 122 142 IPR001623 -
Gma13g03022 297 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03022 Gma-Chr13 44653522 44657104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03022 88 148 C2H2 Transcription Factor Family AT1G74250 40.299 8.18e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03022 - - gmx:100793601 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03022 13 44653522 44657104 Gma13g03022 13 44653522 44657104 ECH
Gma13g03022 13 44653522 44657104 Gma15g00338 15 2907684 2911533 GST