Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03020 ATGAATTCGGACACGACTTCCTATTGGTGCTACAGCTGCACGCGCTTCGTTCACATACAAGAACAGAACGACGTCGTTTGCCCGCGCTGCCACGGCGGCTTCGTCGAAAAGGTCACCGCCCCCCAATCGTCAAGGCAAGGCTTCCGCCGCCGACGCCGCAACGCCGGGAACCACTCGGCGTTCAACCCGGTGATCGTGCTCCGCGGACCGGGAGAGGACGAGGAGAGCAGCTTTGAGTTATACTACGACGGCTTCGACGGCGAGGGGCTCCGCCCGCTGCCATCCACCATGTCGGAGTTCTTGCTTGGATCGGGATTCGACCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCCTCGGGAGGGCTGAGAATCCACCGGCGTCTAAGGCGGCTATAGAGTCAATGCCGACGGTGGAAATCACCGAGTCTCACGTCGCGTCGGAGACGATCTGCGCCGTGTGCAAGGAAGCCTTCGAGCTTGGCGCGTTGGCGCGTGAGATGCCGTGTAAGCATCTCTACCACTCCGATTGCATTCTCCCGTGGCTTTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAACCGCGCCGGAAACAAGAGTCGCCGGCCAGATCGAGGAGGAGGCTGTAGGGTTGACCATATGGAGGTTGCCGGGCGGGGGATTCGCCGTCGGGAGGTTCGCCGGAGAGAGCCACTTGCCGGTGGTTTACACGGAGATGGAGAGTGACGGGAACTCCAACGAAGGTTCTAGAAGAATCTCTCTGGCGGTTGGAAGCGGCAGAGTTAGGGAAAGTCGTGGTGGTGGATTTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCACTCTTCAATAGAAGAAGTTCTAGAGCCTGGGTTTTGGGAAATTGA 945 0.5852 MNSDTTSYWCYSCTRFVHIQEQNDVVCPRCHGGFVEKVTAPQSSRQGFRRRRRNAGNHSAFNPVIVLRGPGEDEESSFELYYDGFDGEGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGLGRAENPPASKAAIESMPTVEITESHVASETICAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQTAPETRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESDGNSNEGSRRISLAVGSGRVRESRGGGFGRIFRNLFGRIGALTRSRSLSTSLFNRRSSRAWVLGN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03020 314 CDD RING-H2_RNF126_like 153 194 - -
Gma13g03020 314 Pfam Ring finger domain 152 194 IPR001841 -
Gma13g03020 314 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Gma13g03020 314 Pfam Protein of unknown function (DUF1117) 217 301 IPR010543 -
Gma13g03020 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 200 IPR013083 -
Gma13g03020 314 SMART ring_2 153 193 IPR001841 -
Gma13g03020 314 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Gma13g03020 314 PANTHER OS05G0110000 PROTEIN 4 273 - -
Gma13g03020 314 SUPERFAMILY RING/U-box 133 199 - -
Gma13g03020 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03020 Gma-Chr13 44645690 44647209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03020 82 205 C3H Transcription Factor Family AT5G01980 41.129 2.50e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03020 - K11982 gmx:100792020 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03020 13 44645690 44647209 Gma13g03020 13 44645690 44647209 ECH
Gma13g03020 13 44645690 44647209 Gma15g00342 15 2932848 2934331 ECH
Gma07g01247 07 16266127 16267455 Gma13g03020 13 44645690 44647209 ECH
Gma13g03020 13 44645690 44647209 Gma15g00342 15 2932848 2934331 GST
Gma13g03020 13 44645690 44647209 Gma12g00539 12 4488518 4489603 PCT
Gma13g03020 13 44645690 44647209 Gma11g01240 11 10580431 10582078 PCT
Gma12g00539 12 4488518 4489603 Gma13g03020 13 44645690 44647209 PCT
Gma11g01240 11 10580431 10582078 Gma13g03020 13 44645690 44647209 PCT