Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03013 ATGTCTTCTAATTTCTTGGTCGAGTTCAACATGAACTCTCTTGTGCAAAACTTTGGTGGTCCTATCTCAGTATTTTCAAATCAGGACCAAGTAGAGAAGGGGTTTGACTTTGAGTTTGATGATTCATCTTCCCCTTCTTCCGGCACAAGCTCAGGTGGAGAATCCACAGAGGTAACCAAATATTCCAACCCAATCCTCAGATACATAAGCGACATACTCATGGACGAGGAAGACGACTTGGAGCGCAAACCCTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAATCCTTCCATGATGCCCTTCTCCATCAAAACCCTTCTTCTTGTTTCTCTGATGAAAATTATGGTCGCACTGTTAGCTTTGAGAGCTGCACCACTGATAATTCATGTGAGTCTGAATTGGTCAACGGTGTTGGTGAATTTGATTCTTCTTTCTTACAACTACAAACCCCTCTGGTTCATGATCCATTTGGGGAGTCACAAGCTGCTGGCTATTTTCATGACGGAACCTGGAATCTCTTCCAGTCTCAGTCTCAGACCAAGCCACTGATGGTGGAAGAGGGTTCTTCTGCTTCAGCACCAAGAGAAAAGAGAAGCCATGGGATGGATGATTATGCTTCTCATGAACAGGAAGGGAGAAGAGGCAGCAAGGTTTCAGCCGTCTTTTCGGACGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTGTCAATCTGGAAGAAGCCAAGCCCTCCTTTGTGCTGCTACTGAACCATCACAAAGTGTTGATTTAGGAGGGTCCAATGGAAAGGCGACACGATCACGTTCAAAGAAAGTGTCTGCCAAAGCCGGTACAGCTGTAGATTTATGGACCCTTCTAACTCAATGTGCACAGGCCGTGGCAAGCTTTGACCAAAGGAACGCAAATGACTTACTCAGCCAGATTAGGCAACACTCTTCAGCTTTTGGAGATGGACTTCAGCGTTTGGCTCATTACTTTGCCAATGGCCTTCAGATAAGGTTGGCTGCTGGGACTCCATCATACACGCCCCTAGAAGGAACAACTTCCGCCGATATGTTGAAAGCTTACAAACTTTATGTTACATCCTCTCCTTTGCAGAGGTTGACAAATTATTTGGCAACCAAGACAATTGTTAGTCTTGTGGGAAATGAGGGCAGTGTTCATATTATTGATTTTGGCATTTGCTATGGTTTTCAGTGGCCTTGCCTTATCAAGAAGCTGTCAGAAAGGCATGGTGGTCCTCCGAGGCTTCGTATAACAGGAATCGAACTTCCTCAGCCAGGATTTCGGCCTGCAGAAAGGGTTGAGGAGACCGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAAGGTACCTTTTGAATACAATTGTCTTGCACAGAAATGGGAAACTATAAAACTTGCAGATCTCAAGATAGACAGGAATGAAGTAACTGTTGTTAGCTGCTTCTACCGGCTGAAGAACTTGCCTGATGAAACTGTGGATGTGAAGTCTCCAAGAGATGCCGTGTTGAAGTTGATAAGGAGGATCAATCCAAACATGTTCATCCATGGGGTGGTCAATGGCACTTACAATGCACCCTTTTTCCTGACTCGGTTTAGGGAGGCACTCTACCACTTCTCATCACTGTTTGATATGTTTGAAGCTAATGTGCCTCGTGAAGACCCGGAAAGAGTGATGCTTGAGAATGGGTTGTTTGGAAGAGATGCCATCAATGTTATAGCGTGTGAAGGGGCTGAGAGGGTTGAGAGACCTGAGACCTATAAGCAGTGGCAGGTTAGGAACCAGAGAGCTGGGTTCAAGCAAGTCCGATTTGATCCTCTATTGGTGAATGATGAAAAAGAAATGGTGAAGAAGGAATATCAAAAAGATTTTGTGGTGGCTGAGGATGGCAAAAAGTGTCTTGTAACTAGTAATCTACTCTTAGCACAAATTTACTACTGA 1959 0.4502 MSSNFLVEFNMNSLVQNFGGPISVFSNQDQVEKGFDFEFDDSSSPSSGTSSGGESTEVTKYSNPILRYISDILMDEEDDLERKPCMLQECLRLQAAEKSFHDALLHQNPSSCFSDENYGRTVSFESCTTDNSCESELVNGVGEFDSSFLQLQTPLVHDPFGESQAAGYFHDGTWNLFQSQSQTKPLMVEEGSSASAPREKRSHGMDDYASHEQEGRRGSKVSAVFSDESESPEILDEVLLCQSGRSQALLCAATEPSQSVDLGGSNGKATRSRSKKVSAKAGTAVDLWTLLTQCAQAVASFDQRNANDLLSQIRQHSSAFGDGLQRLAHYFANGLQIRLAAGTPSYTPLEGTTSADMLKAYKLYVTSSPLQRLTNYLATKTIVSLVGNEGSVHIIDFGICYGFQWPCLIKKLSERHGGPPRLRITGIELPQPGFRPAERVEETGRRLANYCKKFKVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVDVKSPRDAVLKLIRRINPNMFIHGVVNGTYNAPFFLTRFREALYHFSSLFDMFEANVPREDPERVMLENGLFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQVRFDPLLVNDEKEMVKKEYQKDFVVAEDGKKCLVTSNLLLAQIYY 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03013 652 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 640 - -
Gma13g03013 652 Pfam GRAS domain family 289 638 IPR005202 -
Gma13g03013 652 MobiDBLite consensus disorder prediction 36 57 - -
Gma13g03013 652 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 640 IPR005202 -
Gma13g03013 652 MobiDBLite consensus disorder prediction 40 57 - -
Gma13g03013 652 MobiDBLite consensus disorder prediction 194 220 - -
Gma13g03013 652 ProSiteProfiles GRAS family profile. 278 652 IPR005202 -
Gma13g03013 652 MobiDBLite consensus disorder prediction 185 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03013 Gma-Chr13 44601141 44603633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03013 61 635 GRAS Transcription Factor Family AT2G29060 45.085 6.26e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g03013 GRAS 8.7e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03013 - - aprc:113855970 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03013 13 44601141 44603633 Gma13g03013 13 44601141 44603633 ECH
Gma13g03013 13 44601141 44603633 Gma15g00351 15 2978156 2985519 ECH
Gma13g03013 13 44601141 44603633 Gma15g00351 15 2978156 2985519 GST
Gma13g03013 13 44601141 44603633 Gma12g00549 12 4593640 4596470 PCT
Gma13g03013 13 44601141 44603633 Gma11g01247 11 10638869 10640911 PCT
Gma12g00549 12 4593640 4596470 Gma13g03013 13 44601141 44603633 PCT
Gma11g01247 11 10638869 10640911 Gma13g03013 13 44601141 44603633 PCT