Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03009 ATGAGGTTATCACTCACAATCACAACTACCCTTCTTCTTCCACCCACCATCATGTTCACAACTACCTCAGCGTGGAGAGCCCTGACCAAAGTCTCTCTTGGTAACTCCAGTCATAATAATAATAATAATAATAGCAGTAGTACTCTTAGTTGCAGCACTAGCAGCTCCGCTGAGTCTCAGTGGAGAAACCTTGACCATATTCCTGATAGCTTTGTTTTCCACTCTAATTCAACCACCAACATGAATACTGGATTTGGATTCTTCAACGATTCCCTGCAGGCTGGGTTTCTTGATTCTACATTTCTACAGAAATTCCAGAGAGGTGTAGACCAAGGTACCCAGTTCCTTCCTAAACATACTCCATTCATTATTGCCCCTTCTTTCACAAAGGCTCCTCATCTGGTAATTAAGACAGAAGCAGAAGAAGGAGACCATTTTCGGACCGTGTCAGGAGGAAGGAAAATTCGGGAGCGGGAAGAGAATGAAGCAGATGAGAGAAGCAGGAAGCAATCAGCACCATACATGGATGACAGTGAGCAGTCTGAATTATTTGATAAAGTACTCATAGGCACTGGCTTAGGAAAAGGGGTGCCTCCTAACACAACCCATGAAACAATATTAACAAATATGTTTGGTGGAGATGTTAGGAAAAGTGATGGGGAAGTTGTGGATCTTAGGACACTGCTGATGCTATGTGCACAAGCTGTTGCTTCTGCTAGTAGTCCTTCATTTGCTAAGCAATTAGTAAAGCAAATTAAGCAGAATTCTTCTCCAATCGGGGATGAGACTCAAATGCTTGCACATTACTTTGGAAACGCCCTTGAAGCACGTTTGGATGGAACAGGCTACCAGGTTTATAGTGTTCTATCCTCCAAAAGAACTTTTGTCAAAGACATGATAAAAGCTTACCATGTATATGCTTCAGTGTGCCCATTTGAAAAGATAGCAGTCATGTTTGCCAACAATTATATTAGGAATCTAACCGAGGAAGCTGAAACAATTCACATCATAGAGTTTGGTATCCGCTATGGCTTCAAGGGGCCTGGACTTGTCGGCCATCTATCAAGACGTGCTGGTGGACCACCCAAGCTTCGAATCACGGGGATAGATTTGCCACAACCTGGTTTAAGGCCACGACAGAGGGTGCTCGAGACAGGGCGTAGGCTCGCAAATTATTGCAAGCGTTTCAATGTTCCATTTGAGTTCAATGCTATGGCACAGAGATGGGACACCATCAAAGTGGACGACCTCAAGATACAAAGGAATGAATTTGTGGCTGTGAACTGCATGTTTCAGTTTGAGCATCTGCTAGACGAGACTGTGGTGTTGAATAATCCCAGGGATGCTGTTTTGAGATTGATTAAGAATGCAAATCCTGACATATTTGTGCATGGCATTGTCAACGGATCCTATGATGTACCATTCTTTGTGTCATGGTTCCGGGAGGCTCTCTTTCATTACACTGCATTGTTTGACATGCTTGACACCAACGTTGCTCGCAAGATCCCATGA 1512 0.4358 MRLSLTITTTLLLPPTIMFTTTSAWRALTKVSLGNSSHNNNNNNSSSTLSCSTSSSAESQWRNLDHIPDSFVFHSNSTTNMNTGFGFFNDSLQAGFLDSTFLQKFQRGVDQGTQFLPKHTPFIIAPSFTKAPHLVIKTEAEEGDHFRTVSGGRKIREREENEADERSRKQSAPYMDDSEQSELFDKVLIGTGLGKGVPPNTTHETILTNMFGGDVRKSDGEVVDLRTLLMLCAQAVASASSPSFAKQLVKQIKQNSSPIGDETQMLAHYFGNALEARLDGTGYQVYSVLSSKRTFVKDMIKAYHVYASVCPFEKIAVMFANNYIRNLTEEAETIHIIEFGIRYGFKGPGLVGHLSRRAGGPPKLRITGIDLPQPGLRPRQRVLETGRRLANYCKRFNVPFEFNAMAQRWDTIKVDDLKIQRNEFVAVNCMFQFEHLLDETVVLNNPRDAVLRLIKNANPDIFVHGIVNGSYDVPFFVSWFREALFHYTALFDMLDTNVARKIP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03009 503 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 107 501 - -
Gma13g03009 503 MobiDBLite consensus disorder prediction 146 176 - -
Gma13g03009 503 ProSiteProfiles GRAS family profile. 216 503 IPR005202 -
Gma13g03009 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 107 501 IPR005202 -
Gma13g03009 503 Pfam GRAS domain family 225 500 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03009 Gma-Chr13 44572503 44574101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03009 67 501 GRAS Transcription Factor Family AT1G07530 45.868 4.19e-138 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g03009 GRAS 1.7e-72 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03009 - - gmx:100780343 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03009 13 44572503 44574101 Gma15g00354 15 3005659 3007820 GST
Gma13g03009 13 44572503 44574101 Gma12g00552 12 4619557 4625233 PCT
Gma13g03009 13 44572503 44574101 Gma11g01254 11 10681268 10684474 PCT
Gma12g00551 12 4613052 4615756 Gma13g03009 13 44572503 44574101 PCT
Gma11g01253 11 10677537 10680643 Gma13g03009 13 44572503 44574101 PCT