Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03002 ATGTACCACCCAAAACAAAACACGCACAACCTCTCTCTGTTTTTTGGAGTCAGCTTCTCTGCAAACTGCATACAGGATCGCAACATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATTTAACACTGTGTTCAATTCAAAGTATGTGAGTACAGATGGAAATGATCTCGGTAGCACAAACGATAAGGTTTCAGCAAACTCAGTTCCTCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACCTTGTCAGAACTTAAGACGGCCACTAGAAATTTCCGTCCAGATAGCGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGACCGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTACGAATTTATGCCACGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTACGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAGCAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGAGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACATATGGATACGCAGCACCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGCGATGTGTACAGTTTTGGAGTTGTCCTGCTGGAAATGTTGTCTGGGAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCTTTCATGGCAAACAAGCGTAAGATATTCCGCGTGTTGGACACCCGGCTCCAAGGACAATATTCAACAGATGATGCCTACAAGCTAGCCACCCTTGCCTTGCGCTGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGATCAAGTGGTTACGACATTGGAGCAGTTGCAGCTTTCTAATGTAAATGGAGGGCCTCGTGTTCGTAGAAGAAGTGCTGATGTTAATAGAGGCCATCAAAATCCTTCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCCGATGATATTAGCCGTTTGGAGACTCCCAACGCTTATCCCCGACCCTCTGCATCCCCTCTTTATACTTGA 1344 0.4457 MYHPKQNTHNLSLFFGVSFSANCIQDRNMGVCLSAQIKAESPFNTVFNSKYVSTDGNDLGSTNDKVSANSVPQTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAEAKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPFMANKRKIFRVLDTRLQGQYSTDDAYKLATLALRCLSIESKFRPNMDQVVTTLEQLQLSNVNGGPRVRRRSADVNRGHQNPSSVNGSRVRRRSADDISRLETPNAYPRPSASPLYT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03002 447 Pfam Protein tyrosine and serine/threonine kinase 106 384 IPR001245 GO:0004672|GO:0006468
Gma13g03002 447 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Gma13g03002 447 CDD STKc_IRAK 108 387 - -
Gma13g03002 447 MobiDBLite consensus disorder prediction 58 82 - -
Gma13g03002 447 Gene3D Transferase(Phosphotransferase) domain 1 188 399 - -
Gma13g03002 447 ProSiteProfiles Protein kinase domain profile. 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03002 447 SUPERFAMILY Protein kinase-like (PK-like) 76 384 IPR011009 -
Gma13g03002 447 PANTHER OS01G0588500 PROTEIN-RELATED 53 406 - -
Gma13g03002 447 MobiDBLite consensus disorder prediction 392 447 - -
Gma13g03002 447 Gene3D Phosphorylase Kinase; domain 1 77 187 - -
Gma13g03002 447 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 53 406 - -
Gma13g03002 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03002 Gma-Chr13 44510723 44515657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03002 48 384 Glycoside Hydrolase AT3G07070 46.450 2.28e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma13g03002 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03002 - - gmx:100788856 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03002 13 44510723 44515657 Gma13g03002 13 44510723 44515657 ECH
Gma13g03002 13 44510723 44515657 Gma15g00362 15 3071328 3074366 GST
Gma13g03002 13 44510723 44515657 Gma12g00560 12 4680336 4684031 PCT
Gma13g03002 13 44510723 44515657 Gma11g01261 11 10749223 10754145 PCT
Gma12g00560 12 4680336 4684031 Gma13g03002 13 44510723 44515657 PCT
Gma11g01261 11 10749223 10754145 Gma13g03002 13 44510723 44515657 PCT