Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02996 ATGGAGCTTTTGAAGCCTTTGCACCCTCACCATGCACCCATTTTGCGAATTCCCTTTCACGCTGTCCCCTCTTCATCTTCTTCTCAATCTCAGTCTCAGGTTCCCCTCCCTATGATTTCTAAGGTTCATGTCGCTGTTGGGAAATCGCTCGACAAAGCTGTTCCTCTGCTTCGATGGACTTTAAACCACTTTCGGAACGCGGAAATCGTCATTGTTCATGCTTATCAACCTTCTCTCACCATCCCCACTCTATTGGGGAAATTGCCAGCATCACAGGCTAGTCCTGCAGTGGTGTCTGCTTTTCGAAAAGTCGAAAGAGAACAAATCATGAAGCTCTTAGACAAGTATTTGAGCATTTGCCGCGCAGCTAGGGTTAAGGCAGCCATTATTGTAACCGAAGCTGACCAAGTCCAGAAAGGAATTGTTGATTTGGTTATTAAGCATAATATTGAGAAGCTTGTCATTGGAGCAGTACCAGAAAATTGCATGAAAGTGAAAAGGAATTCCAGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTCATGTACTCAACCCGAGATTGCCATCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTTGACTCAGAATATCTTTGGCCAAATTCAGCAAGAACTACTGCTGTTTCTGGAATTAGAAGTTGGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAAGCATCCAGTTGCTGCAGTCATTGTTCCCCCCAAAATTCTTCTCGGGCTTATTTTGATACATATTTAGAGGTCATGGAAGAAAGAATTAACAAACAACTTATTGAAACCAAGAGAGAAGCTGAGGCAGTAACAGACGAAGCCTTCACAGAGCTATTAAAGTGTGAGAAGTTAGAAGTTGAAGCCATGGAGGCTATTAGGAAGGTCAATTTGTTTGAATCTGCCCATGTGCGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGATACAGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTGGCGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCAAGAAGCAAACCGTAGGCGCGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATTAGGAGACAGAAAACGGAAGCCCTACGTTGGCTTGAGCGGTGGAGGAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCCGAAGAATTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGAGCAAGGTGGATATGGTTGCATATACAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCATTGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAGCCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTGGGTTGCAAGATGTGTGGATTTGGGCTCTGCAGGCTGGTGAGCGAGGAGTCTCTCCTCCGTCCTAGTTTCCGCTTGAGCACTGAACCAAAAGGTGCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGAATACTAACCACCAAGTCTGACATCTACTCCTTCGGGCTCATCATTTTACAACTTCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTTTAGTACGCAATGCAGTTTCATGTGGAAAGTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAATGCAATTGGTTGAACTGGGACTGCAATGCTGTCAACAATACCATAGAGACAGACCAGAGTTAACACCTACACTTGTGAGAGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCTGTACCATCTTTTTTCTCATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGACGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGACATGATACTTCTCCCATGACTAATTTGAAATTAAGTCACCTGTTTCTTACTCCCAATTACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2466 0.4307 MELLKPLHPHHAPILRIPFHAVPSSSSSQSQSQVPLPMISKVHVAVGKSLDKAVPLLRWTLNHFRNAEIVIVHAYQPSLTIPTLLGKLPASQASPAVVSAFRKVEREQIMKLLDKYLSICRAARVKAAIIVTEADQVQKGIVDLVIKHNIEKLVIGAVPENCMKVKRNSSKANYTAKNAPPFCEVWFIYKGKHIWTREASETPCSSSSCTQPEIAITESLRCRSFQYGKNELFDSEYLWPNSARTTAVSGIRSWVQGEIIETEATFSSKASSCCSHCSPQNSSRAYFDTYLEVMEERINKQLIETKREAEAVTDEAFTELLKCEKLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALRDTVQEQQKLLNESEEIAGELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKTEALRWLERWRSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIEQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKMCGFGLCRLVSEESLLRPSFRLSTEPKGAFTYTDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAVLVRNAVSCGKLSSILDSSAGEWPSAVAMQLVELGLQCCQQYHRDRPELTPTLVRELEQLHASEERPVPSFFSCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNYALRLAIQDWLCKS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02996 821 PANTHER OS02G0152300 PROTEIN 29 820 - -
Gma13g02996 821 Coils Coil 351 371 - -
Gma13g02996 821 CDD RING-Ubox_WDSUB1_like 755 796 - -
Gma13g02996 821 Pfam U-box domain 751 820 IPR003613 GO:0004842|GO:0016567
Gma13g02996 821 Gene3D Phosphorylase Kinase; domain 1 454 549 - -
Gma13g02996 821 PANTHER OS10G0100500 PROTEIN 29 820 - -
Gma13g02996 821 Coils Coil 379 413 - -
Gma13g02996 821 SUPERFAMILY Protein kinase-like (PK-like) 461 736 IPR011009 -
Gma13g02996 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 179 - -
Gma13g02996 821 Coils Coil 295 315 - -
Gma13g02996 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842|GO:0016567
Gma13g02996 821 SMART Ubox_2 754 817 IPR003613 GO:0004842|GO:0016567
Gma13g02996 821 Gene3D Transferase(Phosphotransferase) domain 1 550 751 - -
Gma13g02996 821 Gene3D HUPs 26 189 IPR014729 -
Gma13g02996 821 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Gma13g02996 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 821 IPR013083 -
Gma13g02996 821 ProSiteProfiles Protein kinase domain profile. 477 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02996 821 SUPERFAMILY RING/U-box 746 820 - -
Gma13g02996 821 CDD STK_N 41 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02996 Gma-Chr13 44462783 44467239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02996 41 818 U-box Gene Family AT2G45910 37.484 1.22e-172 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma13g02996 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02996 - - gmx:100788846 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02996 13 44462783 44467239 Gma13g02996 13 44462783 44467239 ECH
Gma13g02996 13 44462783 44467239 Gma15g00369 15 3110578 3114891 GST
Gma13g02996 13 44462783 44467239 Gma11g01265 11 10783129 10789594 PCT
Gma11g01265 11 10783129 10789594 Gma13g02996 13 44462783 44467239 PCT