Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02982 ATGTCTGCGGCTTTGGATATGACCCTCGAAGATATAATTAAGAACAACAAGAAATCTTCCCTCGCCAACACCAGGGGCCGAGGCCGAGCCTCGGGACCCGGACCCGCTCGCCGCCTCCCCAACCGTGCCGCCAATCGCGCCGCACCGTATGCCGCTGCCAAGGCGCCGGAGACAGCTTGGAAACACGATATGTACGCGAACCAGCCAGTGGCCGCGGCGTATCCAGGTGGTCGAGCGTCTTCCATCGAAACAGGGACTAAGCTCTACATTTCCAATTTGGATTATGGCGTTTCCAATGATGATATTAAGGAGTTGTTTCTTGAAGTTGGCGACGTGAAACGGCATACTGTTCATTATGACAGGAGTGGGAGATCCAAGGGTACGGCAGAAGTAGTCTTCTCGCGCCGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAATGTTCAGCTGGATGGGAAACCAATGAAGGTAGAGATTGTGGGGACGAACATCGCTACACATGCTGCACCACCCGCTGTGAATGGAACTTTTGGAAACCCAACTGGAGTTCCTAGAAGTGGACAAGGGAGAAGTGGGTCATTAGGAAGGCCACGTGGTGGGAGTAGAGGTCGTGGCAGCATTCAACGGGGCCGGGGACGTGGAAGAGGAGGTCGTGATGAAAAGGTATCTGCTGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCTGAGGCTATGCAATTAAACTGA 732 0.5301 MSAALDMTLEDIIKNNKKSSLANTRGRGRASGPGPARRLPNRAANRAAPYAAAKAPETAWKHDMYANQPVAAAYPGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDVKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAAPPAVNGTFGNPTGVPRSGQGRSGSLGRPRGGSRGRGSIQRGRGRGRGGRDEKVSAEDLDADLEKYHAEAMQLN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02982 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 242 - -
Gma13g02982 243 MobiDBLite consensus disorder prediction 213 231 - -
Gma13g02982 243 MobiDBLite consensus disorder prediction 16 50 - -
Gma13g02982 243 CDD RRM_THOC4 86 160 - -
Gma13g02982 243 SUPERFAMILY RNA-binding domain, RBD 57 163 IPR035979 GO:0003676
Gma13g02982 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Gma13g02982 243 Gene3D - 73 226 IPR012677 -
Gma13g02982 243 MobiDBLite consensus disorder prediction 169 231 - -
Gma13g02982 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Gma13g02982 243 SMART rrm1_1 87 159 IPR000504 GO:0003723
Gma13g02982 243 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 242 - -
Gma13g02982 243 Pfam C-terminal duplication domain of Friend of PRMT1 185 237 IPR025715 -
Gma13g02982 243 SMART FoP_duplication_2 169 243 IPR025715 -
Gma13g02982 243 Coils Coil 225 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02982 Gma-Chr13 44334789 44339084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02982 85 160 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.43e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02982 K12881 - gmx:100783362 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02982 13 44334789 44339084 Gma13g02982 13 44334789 44339084 ECH
Gma13g02982 13 44334789 44339084 Gma12g00578 12 4853025 4858951 PCT
Gma13g02982 13 44334789 44339084 Gma11g01284 11 10949216 10954358 PCT
Gma12g00578 12 4853025 4858951 Gma13g02982 13 44334789 44339084 PCT
Gma11g01284 11 10949216 10954358 Gma13g02982 13 44334789 44339084 PCT