Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02976 ATGTCACAGAGAATCGGGACAAAGCTCTTCGTCCACAGATTATCCTTTTACACTACACAGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGACTAGTTACCCAAGCTGATCTAGCGTTGGATCCTATAACCAAAAGGCCCAAAGGTTTCGGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTGCAAGGCCATGAAtggcaggATTGTTAATGGAAGGCTGATTTTGGTTGAACCTGCAAACGAAAAATGA 261 0.4215 MSQRIGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVEPANEK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02976 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gma13g02976 86 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Gma13g02976 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gma13g02976 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 82 - -
Gma13g02976 86 Gene3D - 2 86 IPR012677 -
Gma13g02976 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 82 - -
Gma13g02976 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02976 Gma-Chr13 44306292 44308902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02976 6 86 Eukaryotic Initiation Factors Gene Family AT2G23350 37.037 2.90e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02976 K13195 - gmx:100781760 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02976 13 44306292 44308902 Gma13g02976 13 44306292 44308902 ECH
Gma13g02976 13 44306292 44308902 Gma15g00390 15 3249546 3253153 GST