Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02974 ATGAAGAGAGGCAGAGAAGAGGGTGAGTTAGACATGGCTAATTGCTTGATGCTATTGACCAAAGTTGGTGAGAGTGAAACCAATTACCCAATATCAAAGGGTAGAGATGATGGTGATTTCAAGTGCAAGACTTGCAATAGAAGGTTCTCTTCTTTTCAAGCCCTTGGCGGCCACAGAGCAAGTCACAAAAAACCAAAGCTTATGGTCACAGATCTTTCGTGGCATCACGAGTTACCGAATAACCCAACCATGAAACAACCTAGGATGCACCCGTGTCCGATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAAGTGCTATTAATGATGGCTTGTTGTGTGGTAAACCTTCTTCGTTGTCCATCTTGAAGAATTCATCAAAAGATGCTCATGAAAGGTTGAATTTGCGTTTGGACTTGAACTTGACGCCAATGGAGGAGGATGATCTGAAGCTCAACTTAAGGACGCCCGTCCTCAATTGTTTCATTTGA 516 0.4399 MKRGREEGELDMANCLMLLTKVGESETNYPISKGRDDGDFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSWHHELPNNPTMKQPRMHPCPICGLEFAIGQALGGHMRKHRSAINDGLLCGKPSSLSILKNSSKDAHERLNLRLDLNLTPMEEDDLKLNLRTPVLNCFI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02974 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gma13g02974 171 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Gma13g02974 171 Pfam C2H2-type zinc finger 90 114 - -
Gma13g02974 171 Pfam C2H2-type zinc finger 40 65 - -
Gma13g02974 171 PANTHER ZINC FINGER PROTEIN ZAT5 4 169 - -
Gma13g02974 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
Gma13g02974 171 SMART c2h2final6 90 112 IPR013087 -
Gma13g02974 171 SMART c2h2final6 40 62 IPR013087 -
Gma13g02974 171 Gene3D Classic Zinc Finger 19 115 - -
Gma13g02974 171 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 4 169 - -
Gma13g02974 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02974 Gma-Chr13 44292275 44292917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02974 1 162 C2H2 Transcription Factor Family AT2G28710 46.061 1.61e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02974 zf-C2H2_6 1.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02974 - - gmx:100781211 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02974 13 44292275 44292917 Gma15g00392 15 3259423 3260141 GST
Gma13g02974 13 44292275 44292917 Gma12g00585 12 4901966 4904193 PCT
Gma13g02974 13 44292275 44292917 Gma11g01291 11 11012266 11013053 PCT
Gma12g00585 12 4901966 4904193 Gma13g02974 13 44292275 44292917 PCT
Gma11g01291 11 11012266 11013053 Gma13g02974 13 44292275 44292917 PCT