Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02971 ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA 606 0.4587 MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02971 201 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Gma13g02971 201 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 193 - -
Gma13g02971 201 MobiDBLite consensus disorder prediction 43 111 - -
Gma13g02971 201 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma13g02971 201 CDD SANT 1 43 IPR001005 -
Gma13g02971 201 Gene3D - 2 69 - -
Gma13g02971 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Gma13g02971 201 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Gma13g02971 201 MobiDBLite consensus disorder prediction 54 77 - -
Gma13g02971 201 SMART sant 1 45 IPR001005 -
Gma13g02971 201 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02971 Gma-Chr13 44252961 44254617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02971 1 177 MYB Transcription Factor Family AT3G46130 51.397 1.11e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g02971 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02971 K09422 - gmx:778055 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02971 13 44252961 44254617 Gma13g02971 13 44252961 44254617 ECH
Gma13g02971 13 44252961 44254617 Gma15g00396 15 3293714 3295329 GST
Gma12g00587 12 4932010 4933557 Gma13g02971 13 44252961 44254617 PCT
Gma11g01294 11 11062348 11063913 Gma13g02971 13 44252961 44254617 PCT