Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02970 ATGCCGATTTCTAGAATTGCCATTGGAAATTCTTCGGAGTTGAACCAATCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCCGGGGAAGGCTCTGGAATGGCTTATAATAAGCTGACAAACAATGGTTCAGCAACACCAGCAGGGTTAGTGGCAGCATCACTGTCACATGCCTTTGCACTTTTTGTTGCGGTCTCTGTTGGAGCCAACATTTCTGGCGGTCATGTAAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACCCTCTTTAGAAGCATCTTGTACTGGATTGCTCAGTTACTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTTGCACTATCTCCTGGGGTGGAAGCAGGGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGATCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATCGTTGGTGCGAACATCTTGGCGGGGGGTGCATTTGATGGTGCATCCATGAACCCTGCAGTGTCGTTTGGGCCTGCTGTTGTCAGTTGGACCTGGTCTAACCACTGGGTTTATTGGGTCGGCCCATTTGCTGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTCTTCATTAGCCCAAACACTCATGAACAGCTCCCCGTCACAGATTATTAG 759 0.4796 MPISRIAIGNSSELNQSDALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSPGVEAGNALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWVGPFAGAAIAAVVYEIFFISPNTHEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02970 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gma13g02970 252 SUPERFAMILY Aquaporin-like 16 243 IPR023271 -
Gma13g02970 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Gma13g02970 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Gma13g02970 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Gma13g02970 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02970 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02970 Gma-Chr13 44250158 44251721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02970 1 252 Major Intrinsic Protein MIP AT4G01470 79.365 4.26e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02970 K09873 - gmx:547794 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02970 13 44250158 44251721 Gma13g02970 13 44250158 44251721 ECH
Gma13g02970 13 44250158 44251721 Gma12g00588 12 4940206 4941378 PCT
Gma13g02970 13 44250158 44251721 Gma11g01296 11 11070672 11072438 PCT
Gma12g00588 12 4940206 4941378 Gma13g02970 13 44250158 44251721 PCT
Gma11g01296 11 11070672 11072438 Gma13g02970 13 44250158 44251721 PCT