Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02968 ATGCTTTTTTTGTGTTCAAACTCTGGTAGAAACAGGGTTGAAGGCCAATTTGTTGAGGAAACAATTCCTAATGAGTATTCTATTCAGTTTCCAAGCGTTAACTTGGAGTCATGTGTGATAAACTCTCTTCCGGTGTCTCAGTTTAAGAAAGATGAGGTTGAGGGGGAACATATGCCAGTTAATGCGGACTGTGCCATTTGTTTGGGAGAATTTGAAGAAGGGGAATGGCTCAAACTTCTTCCTAATTGCACCCACGGCTTCCATGCTTCCTGCATTGACACCTGGTTTCGCTCTCATTCTAATTGCCCTCTTTGCAGAGCTTATGTTAGTCACGCTGACACACAAGAGTGTTCTGTTTCTTTGTACACGCTGCTAGAAACTTCCAGGAGCCAAGACTTCTCCACTGAAACCACTGCGTATTTCCAATCCCCTGAAAATTTGGAGATCACACATCACTCCTGTCCTGATTAA 471 0.4331 MLFLCSNSGRNRVEGQFVEETIPNEYSIQFPSVNLESCVINSLPVSQFKKDEVEGEHMPVNADCAICLGEFEEGEWLKLLPNCTHGFHASCIDTWFRSHSNCPLCRAYVSHADTQECSVSLYTLLETSRSQDFSTETTAYFQSPENLEITHHSCPD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02968 156 CDD RING-H2_PA-TM-RING 63 106 - -
Gma13g02968 156 SUPERFAMILY RING/U-box 47 112 - -
Gma13g02968 156 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 118 - -
Gma13g02968 156 Pfam Ring finger domain 63 106 IPR001841 -
Gma13g02968 156 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 118 IPR044675 -
Gma13g02968 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 117 IPR013083 -
Gma13g02968 156 SMART ring_2 64 105 IPR001841 -
Gma13g02968 156 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02968 Gma-Chr13 44229912 44230382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02968 29 109 C3H Transcription Factor Family AT5G10380 54.321 4.15e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02968 - - gmx:102660592 333.954