Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02967 ATGGGTCATGACGGAAACCATTCCATTGGTAGCCCGTATATAATATGGAACCAAACCCTAAACCTCGCCGTTGCCTCTGCCTCTCACCCGCAGGTTGTGCTCTATTCCCCCATTCTCTCTCCGTTTACTGATAGTTCAAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAACTGCCAAGGCAGTTAAGTCCGGTGCTAACTTTAAGAAGAAGACCAAGAAGATCCGAACATCTGTTACCTTCCATCGACCAAGGACTTTGAAAAAGGATAGGAACCCCAAATATCCACGCATTAGTGCTCCACCCAGGAACAAGCTTGATCACTATCAGATATTGAAGTTTCCTCTCACGACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAA 576 0.4531 MGHDGNHSIGSPYIIWNQTLNLAVASASHPQVVLYSPILSPFTDSSKKADPKAQALKTAKAVKSGANFKKKTKKIRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02967 191 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 43 191 - -
Gma13g02967 191 TIGRFAM uL23_arch: ribosomal protein uL23 115 191 IPR019985 GO:0003735|GO:0005840|GO:0006412
Gma13g02967 191 Pfam Ribosomal protein L23, N-terminal domain 52 101 IPR005633 -
Gma13g02967 191 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 108 184 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma13g02967 191 Hamap 50S ribosomal protein L23 [rplW]. 111 191 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma13g02967 191 PANTHER 60S RIBOSOMAL PROTEIN L23A 43 191 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma13g02967 191 Pfam Ribosomal protein L23 111 173 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma13g02967 191 Gene3D - 72 191 IPR012677 -
Gma13g02967 191 ProSitePatterns Ribosomal protein L23 signature. 169 184 IPR001014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02967 Gma-Chr13 44226925 44228272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02967 64 191 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.062 4.92e-66 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02967 K02893 - gmx:100778548 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02967 13 44226925 44228272 Gma13g02967 13 44226925 44228272 ECH
Gma13g02967 13 44226925 44228272 Gma12g00591 12 4960733 4962459 PCT
Gma13g02967 13 44226925 44228272 Gma11g01299 11 11097712 11100708 PCT
Gma12g00591 12 4960733 4962459 Gma13g02967 13 44226925 44228272 PCT
Gma11g01299 11 11097712 11100708 Gma13g02967 13 44226925 44228272 PCT