Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02955 ATGACTGATTATTGGAGAAATATTGGTTTCTTTATATGTGTTTTATCAATCTTCCCCCTTGTGTGCTTCTGTGCCACCTTTGTTCCAGTAGATAATTATCTTATAGACTGTGGAGCAACTGCAAGTACTTCAGTAGGTACACGCAATTTCATAGCAGATAACAACAAGGATCTCCTTTCCACACAAGAAGATATTCTTGCCACTACCTCCTTAAAATCAGTTACTTCTTCCTCCGATGATTTGCCTCTCTATCAAACTGCAAGAGTCTTCACTGGATCCTCAAAGTACACTTTTAAAATTAAGCAGAAGGGGAGGCACTGGATCCGTCTCTATTTCTTTCCATCCACTTATGAAAAGTACAATTTGAGTGCTGCAGATTTCACTGTTTCCACCCAAAACCATGTCCTTTTCAGAAGCCTCAACATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCAGACACCCTTGTTCTCACTTTTACCCCTTCAGGAAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTACTCTGACCCCTATAAATGACACCCTTCAAAGAACTTGGGTTCCAGATCAAAGTTTCCTTTTGGAACCCAACCTTGCCTCAAATTTTTCCAATATTAAGGGTGTTAAATACGAGAACCGCGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTACGGGACTCTCACACAGATGAACTCAAGCAATGATCCCCGTAGTATTTTCAATGTGACATGGCAGTTTGATGTGAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGCGATGTAGTCAGTAAAGCTCTCAATGTACTCATCTTCAATGCTTATGTAGACTCCAAGCTCGCTGCCTCCAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATATTATAGGGATCTGGTTACAGCCGTGGCAGTAAGCAAAACACTTCGTGTAGGTATTGGTCCTTCAGATCTAAATAAGGATTACCCTAATGCCATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATGGGTAATCTTATACCAGGAGCAGGATCTGTGGCTATTACTTCTGGCTCAAGTTCTAAGAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTGGTTGGTGCTGTTGTCTTGGCTGGACTTTTCTTTGTACTATGCAGGAAAAGAAGAAGGTTGGTGCAAAGGCAGTCAAAGACATGGGTTCCTCTATCCATAAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTAccgtgtcccttttgtggcggttcaggaggctacaaataatttcgatgagagttgggttattgggataggtggtttcggaaaagtgtacaagggagagttgagtgatggcacaaaagtggcagttaagagggggaatccacggtcccagcagggtcttgcagaattccgaactgaaattgaaatgctgtctcagttccgtcatcgccatctggtgtctttgattggttattgtgatgaaagaaatgaaatgatcttgatatatgaatatatggagaagggaactctcaagggtcatttatatggttcaggtctgccaagcttaagctggaaggagaggcttgaaatatgcattggatcagctagagggcttcattaccttcacactggctatgctaaagctgtcattcatcgcgatgtgaagtctgcaaatatcctacttgatgagaacctaatggctaaagttgctgattttggattatcaaagacggggcctgaaatcgaccagacacatgtgagcacagctgtcaaaggtagttttgggtaccttgatccggagtatttcaggaggcaacaactaacagaaaagtcagatgtgtattcatttggggtagttctgtttgaagttctttgcgcaaggcccgtcatagatccaacacttcctagagaaatggtaaacttggcggaatgggcgttgaaatggcagaagaaaggacagttggagcaaatcatagatcaaacacttgcaggcaaaatcagaccagattctctgaggaagtttggagaaactgctgagaaatgcttggctgactatggtgtggacaggccttctatgggagatgtcttgtggaatttggagtatgctctccaacttcaagaggCAGTGGTTCAAGGCGACCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCTCAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCGGTTACACAATTTGCAGGCTCAGGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAG 2514 0.2792 MTDYWRNIGFFICVLSIFPLVCFCATFVPVDNYLIDCGATASTSVGTRNFIADNNKDLLSTQEDILATTSLKSVTSSSDDLPLYQTARVFTGSSKYTFKIKQKGRHWIRLYFFPSTYEKYNLSAADFTVSTQNHVLFRSLNMQKDPVMKEYSVNVTSDTLVLTFTPSGNSTAFVNAIEVVSVPDDLIVDDGFALDPSVTSSGLVTQALETVWRVNMGGPTLTPINDTLQRTWVPDQSFLLEPNLASNFSNIKGVKYENRGQATENTAPPTVYGTLTQMNSSNDPRSIFNVTWQFDVSPGFQYLVRLHFCDVVSKALNVLIFNAYVDSKLAASSADPSTTSNNALGVPYYRDLVTAVAVSKTLRVGIGPSDLNKDYPNAILNGLEIMKMNNSMGNLIPGAGSVAITSGSSSKKTGMIVGVSVGVVGAVVLAGLFFVLCRKRRRLVQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGLPSLSWKERLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWALKWQKKGQLEQIIDQTLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVTQFAGSGLDDLSGVSMSRVFSQLVKSEGR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02955 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 19 814 - -
Gma13g02955 837 PIRSF SRK 49 178 IPR024171 GO:0004674
Gma13g02955 837 PIRSF SRK 371 813 IPR024171 GO:0004674
Gma13g02955 837 Gene3D Phosphorylase Kinase; domain 1 459 572 - -
Gma13g02955 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02955 837 Gene3D - 32 183 - -
Gma13g02955 837 Gene3D - 206 390 - -
Gma13g02955 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Gma13g02955 837 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Gma13g02955 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Gma13g02955 837 PANTHER OS07G0166700 PROTEIN 19 814 IPR045272 GO:0004714|GO:0006468
Gma13g02955 837 Pfam Protein tyrosine and serine/threonine kinase 502 696 IPR001245 GO:0004672|GO:0006468
Gma13g02955 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02955 837 CDD STKc_IRAK 503 768 - -
Gma13g02955 837 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Gma13g02955 837 Pfam Malectin-like domain 35 388 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02955 Gma-Chr13 44116403 44120148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02955 11 837 Receptor kinase-like Gene Family AT3G46290 65.988 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gma13g02955 Malectin_like 7.4e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02955 - - gmx:100305416 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02955 13 44116403 44120148 Gma13g02955 13 44116403 44120148 ECH
Gma13g02955 13 44116403 44120148 Gma15g00410 15 3443051 3445552 GST
Gma13g02955 13 44116403 44120148 Gma12g00662 12 5711650 5714255 PCT
Gma13g02955 13 44116403 44120148 Gma11g01317 11 11307396 11309906 PCT
Gma12g00662 12 5711650 5714255 Gma13g02955 13 44116403 44120148 PCT
Gma11g01317 11 11307396 11309906 Gma13g02955 13 44116403 44120148 PCT