Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02952 ATGTATGCAAATTCCAGCACTGCATCACCTTCCTCATTCTTCCCCAAACTCACTGAACTCAACAATTCTGAGACCAATTACTATTATTACCACaacaataacaataacaataacaataGTAATTGTAGCAGTGGCTATAGCAGTTACGGTGGATCACCCTCACCCACACCTCCTTCTGTGCCCATTCCCAACTTGATGCAGAGGAGTGTTAGCTCCCATTCCTTCCACTGCAACAACAATGCCACCCATCATCCCTTTTCTGCTCTCTTTGCTCAGCTGCTCGACTCCGACGACTCTCCCGTCAGAAGAGTTTGCAGTACTGGTGATCTCCAGAGGATCAATGGAATGCAACATAATCATCACTCGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGAATGAGCAGAGCCTGTCGATATAGCCCGGAGGAGAAGAAGGTCAGAATTGAGAGATACAGAAGCAAGAGGAGCCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGACGGTTTGCGAGGAATGACGAAATTGACAAGAACACTACAATTCAATGGAGCCAAATTGGTGCTGGAGAGGATGAGGATGAAGAAGATGAGAATTGGATCACTATGTTAGATTCCATAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGAAGTTCCTCCTTTGGTTTATTCTATTAG 732 0.4358 MYANSSTASPSSFFPKLTELNNSETNYYYYHNNNNNNNNSNCSSGYSSYGGSPSPTPPSVPIPNLMQRSVSSHSFHCNNNATHHPFSALFAQLLDSDDSPVRRVCSTGDLQRINGMQHNHHSDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRSQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNTTIQWSQIGAGEDEDEEDENWITMLDSIVAANFAQESQGSSSFGLFY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02952 243 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 243 IPR045281 GO:0009909
Gma13g02952 243 Pfam CCT motif 150 190 IPR010402 GO:0005515
Gma13g02952 243 PANTHER CCT MOTIF PROTEIN 3 243 - -
Gma13g02952 243 ProSiteProfiles CCT domain profile. 148 190 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02952 Gma-Chr13 44096467 44098782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02952 144 195 C2C2-CO-like Transcription Factor Family AT5G15850 48.077 4.45e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma13g02952 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02952 - - gmx:100820236 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02952 13 44096467 44098782 Gma13g02952 13 44096467 44098782 ECH
Gma13g02952 13 44096467 44098782 Gma12g00661 12 5683570 5686297 PCT
Gma13g02952 13 44096467 44098782 Gma11g01319 11 11318930 11321613 PCT
Gma12g00661 12 5683570 5686297 Gma13g02952 13 44096467 44098782 PCT
Gma11g01319 11 11318930 11321613 Gma13g02952 13 44096467 44098782 PCT