Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02947 ATGGAGCAGTCAGAAAAATCGCCCACGAAAATATCACCACTAAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAGCTTTAGCTTCAACTTCAACCAACGCCCGCGTGCGTTCACAGCCTCTTTGGAAATCGTGGACGGAGTCGGAAGAACCGCGCAATGAAATCGCTGCCACGTCGTGGATGGCCATCAATCCGGCGGCCGGAGAAAGCGGCGAGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTCCGGACCGACACCGAGACCGGCAAGCCGCAGGGGGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCTAACGCCGCGAAACTCGCCGCCGCTGCTTCGTCATCCAGGAAGAACTCTCAGAACTCCGCCAGAACTTCCGGCGACTCTTCGGACGGCGGCGGCGGAGGCGGAGGGATTCCGAGAATTTCGGAGGATGTGATGGGAGCTTTGTCGGCTTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAAGCCGATTACCCGATCCTGTATGCGAGTGCTGGGTTCTTTAAAATGACGGGTTATAAGTCCAAGGAAGTTATTGGGAGAAATTGTCGTTTTTTACAGGGTGCGGACACGGATCCCGAAGACGTGGCAAAGATAAGGGAAGCATTGCAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGAAGACGCTACGTCCAAATGGATTGCCCGAATCCTTGATTCGATATGATGCACGGCAGAAAGAGAAGGCTACAAGTTCAGTAACTGAGTTGCTGCAGGCCATGAAGCGCCCCCGAGCATTAAGTGAATCCGCAAGCCGTCCCTCCATCAGAAAATCAGGATCTAGATCTTCAGACGAAGAAAAATTAGAACAAGAACAAGAAGATGACAAAGAGAAAGCACAAAAAACATTAAGAAGAATATCTGAGAGTGGAGCTTCATTTGGACGCAAGTCCGAAGGATCAGGAAATAGAATTTCAATGGAAAGAATCAGTGAACTGCCCGAAAATAAACACAGAAACTCTCAACGACGTTCTTTCATGGGGTTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAGTGAAGTCATTGAGGACGAGAGCTCTGAGAGTGAGGATGATGAGAGGCCTAATAGTTTTGAATTAGATGACAAAGAAAAGCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTCGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAACAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTAATCAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAATTGGTAAAACAAACTGCAGAAAATGTCGATGAGGCAGTGAGAGATCTTCCGGATGCTAATAAGAAACCAGATGATTTATGGACAAATCATTCAAAAACAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAGAAGgtcctagaaagtggagaacagataggcttaaagcatttcaggccaattaaaccattggggtcaggagatactggcagTGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCGATGAAAGCTATGGATAAGGGTGTTATGCTCAATCGTAATAAGGTGCATAGAGCTTGCGCAGAGagagaaattcttgacaagttggaccacccttttctacctgcattatatgcttccttccagaccaaaacacacgtttgtttgattactgattattgtcctgggggagaactattcctgcttcttgatcggcagccgactaaggttctcaaggaagatgccgtgagATTTTATGCAGCAGAGGTAGTGATCGTATTGGAGTACCttcattgccaagGAATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACATCTAGCAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAGAAGAAGAAAAAGAAGAAACAGAAAAGTCAAGAGGTTCCAATGTTTATGGCAGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTCCGGGGGAAAACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCTAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCGGAAACTGAAGAAGAAAAAGAAGCCAAAGATATACATCCTGGGCTAGAGGATCTGCAGACAAATATTTTCTAA 2949 0.4144 MEQSEKSPTKISPLRSSFPRDPRGSLEVFNPNTSALASTSTNARVRSQPLWKSWTESEEPRNEIAATSWMAINPAAGESGEAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNAAKLAAAASSSRKNSQNSARTSGDSSDGGGGGGGIPRISEDVMGALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTDPEDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATSSVTELLQAMKRPRALSESASRPSIRKSGSRSSDEEKLEQEQEDDKEKAQKTLRRISESGASFGRKSEGSGNRISMERISELPENKHRNSQRRSFMGFRRKSQSNDESMDSEVIEDESSESEDDERPNSFELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDLPDANKKPDDLWTNHSKTVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIVLEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLIIPATNSKKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETEEEKEAKDIHPGLEDLQTNIF 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02947 982 MobiDBLite consensus disorder prediction 123 141 - -
Gma13g02947 982 Pfam Protein kinase domain 649 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02947 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gma13g02947 982 ProSiteProfiles PAC domain profile. 228 282 IPR000700 -
Gma13g02947 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 175 267 IPR035965 -
Gma13g02947 982 ProSiteProfiles PAC domain profile. 520 574 IPR000700 -
Gma13g02947 982 PANTHER PHOTOTROPIN-1 104 982 - -
Gma13g02947 982 SMART pac_2 231 273 IPR001610 -
Gma13g02947 982 SMART pac_2 523 565 IPR001610 -
Gma13g02947 982 MobiDBLite consensus disorder prediction 431 446 - -
Gma13g02947 982 CDD PAS 461 561 IPR000014 -
Gma13g02947 982 MobiDBLite consensus disorder prediction 1 27 - -
Gma13g02947 982 ProSiteProfiles Protein kinase domain profile. 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02947 982 SMART serkin_6 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02947 982 SMART pas_2 156 225 IPR000014 -
Gma13g02947 982 SMART pas_2 448 517 IPR000014 -
Gma13g02947 982 MobiDBLite consensus disorder prediction 94 153 - -
Gma13g02947 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 462 561 IPR035965 -
Gma13g02947 982 MobiDBLite consensus disorder prediction 412 430 - -
Gma13g02947 982 MobiDBLite consensus disorder prediction 311 446 - -
Gma13g02947 982 Gene3D PAS domain 168 330 - -
Gma13g02947 982 ProSiteProfiles PAS repeat profile. 446 519 IPR000014 -
Gma13g02947 982 ProSiteProfiles PAS repeat profile. 154 225 IPR000014 -
Gma13g02947 982 MobiDBLite consensus disorder prediction 331 357 - -
Gma13g02947 982 CDD STKc_phototropin_like 645 960 - -
Gma13g02947 982 Gene3D Transferase(Phosphotransferase) domain 1 731 960 - -
Gma13g02947 982 MobiDBLite consensus disorder prediction 601 625 - -
Gma13g02947 982 Gene3D PAS domain 435 599 - -
Gma13g02947 982 Gene3D Phosphorylase Kinase; domain 1 646 967 - -
Gma13g02947 982 Pfam PAS domain 469 561 IPR000014 -
Gma13g02947 982 Pfam PAS domain 177 271 IPR000014 -
Gma13g02947 982 Coils Coil 338 362 - -
Gma13g02947 982 PANTHER FLIPPASE KINASE 1-RELATED 104 982 - -
Gma13g02947 982 ProSitePatterns Protein kinases ATP-binding region signature. 653 676 IPR017441 GO:0005524
Gma13g02947 982 SUPERFAMILY Protein kinase-like (PK-like) 630 957 IPR011009 -
Gma13g02947 982 CDD PAS 181 270 IPR000014 -
Gma13g02947 982 TIGRFAM sensory_box: PAS domain S-box protein 181 274 IPR000014 -
Gma13g02947 982 TIGRFAM sensory_box: PAS domain S-box protein 471 561 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02947 Gma-Chr13 44029196 44044099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02947 1 982 AGC Kinase Gene Family AT3G45780 69.463 0.0 1357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma13g02947 Pkinase 3.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02947 K20715 - gmx:100817565 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02947 13 44029196 44044099 Gma13g02947 13 44029196 44044099 ECH
Gma13g02947 13 44029196 44044099 Gma15g00416 15 3497368 3510918 GST
Gma13g02947 13 44029196 44044099 Gma12g00658 12 5627030 5646178 PCT
Gma12g00658 12 5627030 5646178 Gma13g02947 13 44029196 44044099 PCT