Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02945 ATGGGTTGCTTTCGTTGCACCGGCAAATCAAGCAAAAAAACCAACAACATTAATCACGCCGAGAAGCACACTCCTGCTGATAAGGTCAAAGTTAATTCGAATTTGAATGGTAAAAAAGAAGATAATAATCCTAAGCCTGATCAGCTATCTCTGGACGTGAAGTATTTGAATTTAAAAGAGGTTTCCAATGAAGGAAAAGTTAATGGTTACCGGGCACAGACATTTACTTTTGCTGAGCTTGCAGCTGCAACAGGGAATTTCAGGTTAGATTGCTTTCTGGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGGCGCATAGACAAAATAAATCAGGTTGTAGCAATAAAGCAACTAGACCCTCATGGGCTTcaaggaattagagaatttgttgttgaagtgttgacattgagtttggcagaccaccctaatttggtcaagttaattggtttttgtgctgagggagagcagaggctattggtttatgagtACATGTCATTGGGATCTTTGGAGAATCGTTTGCACGATCTTCCGCGTGGTAGAAAACCGATTgattggaattcaagaatgaaaatagcagctggtgcagctagaggtttagagtatttgcataataaaatgaaacctcctgtcatataccgggatctgaaatgctccaatattctgttaggcgaaggatatcattcgaagttatctgattttggcttggcaaaagtaggaccaagtggtgataaaacccatgtttcgacaagagttatgggaacatatggatattgtgccccagactatgcaatgacgggtcaattgacgttcaagtctgatatttatagctttggagttgttcttttggagatcatcacaggcaggaaggcgatcgacaatacaaagcctgctaaagaacaaaatctagtttcatggGCAAAGTCTTTATTCAAAAACCGTAAAAGATTCTGTGAGATGGTTGACCCATTGCTTGAAGGTCAGTATCCAATGAGAGGTTTGTACCAAGCTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAGCCTAGTATGCGGCCTGAAACAACCGATGTGGTTACAGCTCTAGATTACCTTGCATCCCAGAAATACGATCCCCAAATTCATCCAGTACAAAACTGTAGAAAAGAAAGCTCTAGAAAAGGTCTATCTTCTCCAAGGGTGAGAAGTGATGGTCACAGACATTTTGTTAGCAATGGTTCTGAGACAGACAGTTCTGGAGATTAG 1242 0.2544 MGCFRCTGKSSKKTNNINHAEKHTPADKVKVNSNLNGKKEDNNPKPDQLSLDVKYLNLKEVSNEGKVNGYRAQTFTFAELAAATGNFRLDCFLGEGGFGKVYKGRIDKINQVVAIKQLDPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMSLGSLENRLHDLPRGRKPIDWNSRMKIAAGAARGLEYLHNKMKPPVIYRDLKCSNILLGEGYHSKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDNTKPAKEQNLVSWAKSLFKNRKRFCEMVDPLLEGQYPMRGLYQALAIAAMCVQEQPSMRPETTDVVTALDYLASQKYDPQIHPVQNCRKESSRKGLSSPRVRSDGHRHFVSNGSETDSSGD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02945 413 Gene3D Phosphorylase Kinase; domain 1 57 163 - -
Gma13g02945 413 Gene3D Transferase(Phosphotransferase) domain 1 164 384 - -
Gma13g02945 413 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02945 413 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gma13g02945 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gma13g02945 413 SUPERFAMILY Protein kinase-like (PK-like) 73 365 IPR011009 -
Gma13g02945 413 CDD STKc_IRAK 93 362 - -
Gma13g02945 413 MobiDBLite consensus disorder prediction 379 403 - -
Gma13g02945 413 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02945 413 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 388 - -
Gma13g02945 413 MobiDBLite consensus disorder prediction 376 413 - -
Gma13g02945 413 MobiDBLite consensus disorder prediction 1 46 - -
Gma13g02945 413 Pfam Protein tyrosine and serine/threonine kinase 90 360 IPR001245 GO:0004672|GO:0006468
Gma13g02945 413 PANTHER OS07G0668900 PROTEIN 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02945 Gma-Chr13 44015822 44019160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02945 1 366 Glycoside Hydrolase AT3G07070 55.827 1.86e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gma13g02945 PK_Tyr_Ser-Thr 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02945 - - gmx:100810614 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02945 13 44015822 44019160 Gma13g02945 13 44015822 44019160 ECH
Gma13g02945 13 44015822 44019160 Gma15g00418 15 3520669 3524329 ECH
Gma13g02945 13 44015822 44019160 Gma15g00418 15 3520669 3524329 GST
Gma13g02945 13 44015822 44019160 Gma12g00657 12 5615481 5619900 PCT
Gma13g02945 13 44015822 44019160 Gma11g01323 11 11397326 11401569 PCT
Gma12g00657 12 5615481 5619900 Gma13g02945 13 44015822 44019160 PCT
Gma11g01323 11 11397326 11401569 Gma13g02945 13 44015822 44019160 PCT