Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02939 ATGTTGGATCTTAATCTGACTGCCGAGTCGACTCAGAACGACGAGTTGCTGGTGCTGTTGGACAAGTTTCCTGAAGCTTCGTCGGGAACTTCGAATTCCTCCATCGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACGTGTTCACCTTCAATTTCGGAATCCTTAAGGTGGAAGCCGCGAATGACGTCGTTGCCGCGGCGACGAAGGAGCTGTTTCCGGTGAGCTCGGAGAATTGGCAGGGGCAGAGTTCGACGTCGTTGTTTCAGGCGAGGAAGAGTTTGATGGATCTCTCACTAGATCAACAACACGGGGAGGTGAAGGTGGTACAGGTTCAGCCACAGCCTAAGGTGAAGAAGAGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACCGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATTAAATTCAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGATTATGAGGAGGATCTAAAACAGATGAAGAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGCCACAGTTCCGGTTTCTCAAGGGGGAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCTGTGACTAACTTTGAGCCAAGTACATATGAGAGCGAGATGAAACCCGAAGCTATTAATGAAGGTGGCAGTCACGACCTTGACCTCAGTCTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGTCCATCCCTTACAACATGCATCCTGGAAGAAGTTCAATGATGGAGACTAATATTAATTCCGTTATTGGTGATCCTTCTTTGAAAAGACTGGTTGTAACTGAAGAGCGTCCTTCTGTGTGGAATGCCGCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATGGGCACAGATCCTTCAAAAGGAGTCCCAAACCCCAACTGGGCGTGGCAAACACATGGCCAGGTTACTGACACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCCACTTTTCCATCAACTGCCATCTTTCCAACAAAATCCATCAACTCAGTTCCCCATAGCCTCTGTTTCACTTCACCCAGCACACCAGGTAGCAACGCACCTCAATTCTATAACTATTACGAGGTGAAGTCCCCGCAGCCACCGTCCTAG 1431 0.4976 MLDLNLTAESTQNDELLVLLDKFPEASSGTSNSSIVNAEGSSNEDSCSTRAGDVFTFNFGILKVEAANDVVAAATKELFPVSSENWQGQSSTSLFQARKSLMDLSLDQQHGEVKVVQVQPQPKVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHDLDLSLGIATPGHGPKENRGHLQFQSIPYNMHPGRSSMMETNINSVIGDPSLKRLVVTEERPSVWNAAYSTFFPNLERAERMGTDPSKGVPNPNWAWQTHGQVTDTPVPPFSTAASSGFSISATFPSTAIFPTKSINSVPHSLCFTSPSTPGSNAPQFYNYYEVKSPQPPS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02939 476 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Gma13g02939 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 462 - -
Gma13g02939 476 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Gma13g02939 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 462 - -
Gma13g02939 476 MobiDBLite consensus disorder prediction 26 47 - -
Gma13g02939 476 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Gma13g02939 476 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Gma13g02939 476 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02939 Gma-Chr13 43957771 43962210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02939 74 312 AP2-EREBP Transcription Factor Family AT4G36920 68.273 1.56e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma13g02939 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02939 K09284 - gmx:100777102 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02939 13 43957771 43962210 Gma13g02939 13 43957771 43962210 ECH
Gma13g02939 13 43957771 43962210 Gma15g00423 15 3589693 3594385 ECH
Gma13g02939 13 43957771 43962210 Gma15g00423 15 3589693 3594385 GST
Gma13g02939 13 43957771 43962210 Gma12g00653 12 5505492 5509894 PCT
Gma13g02939 13 43957771 43962210 Gma11g01330 11 11508232 11512862 PCT
Gma12g00653 12 5505492 5509894 Gma13g02939 13 43957771 43962210 PCT
Gma11g01330 11 11508232 11512862 Gma13g02939 13 43957771 43962210 PCT