Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02934 ATGGAGCAGTTCATCGATAACTTGCCGCCGATGGATCTGATGCGGTCGGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGCCGAGTCCGCGCACCGCGCCATCTCCTATTTAGGCGAACTCGGCCTTCTCCAATTCCGCGACTTAAATGCTGATAAAAGCCCCTTTCAGAGAACATTTGTTAATCAGGTAAAGCGATGTGGAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAGTAAAGCTGGTCTAATGTCTTCTTCTCGTACTGAATTGCAACCCGATATAGACTTGGAGGATTTAGAGATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTTCGGCAATCCTATAATGAACTCCTAGAATTCAAAATTGTATTACAAAAGGCATGTGGTTTTCTTGTTTCCAATCATAGCCGTGTGGTTTTAGATGAAAGAGAACTACGAGAGAATGTATATTCAAATGATGCCTATGTTGAGACAGTATCTTTGCTTGAACAGGAAATGAGGCCTCAGTCATCAAACTCGTCTGGTTTAAGATTTATCAGTGGGATTATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACGAGAGGCAATATGCTTTTCAATCTGGCACCGGCTGATGAACAAATCATGGATCCTGTTTCAGCTGATATGATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAAGCAAGAACCAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGTAAGCAGAGGCAAATAACTAGAGAGGTTTCATCACGTCTTACGGACTTAGAGGCAACTTTGGAAGCTGGGATTAGGCACCGAAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGCAAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTATGATACGCTGAACATGTTAAACTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGCTGGTGTCCTCTGTTTGCAAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTCGATAGCAATTCTCAAGTTGGCATAATCCTCCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTAGGACCAACACTTTCACAAATCCTTATCAAGAAATTGTTGATGCATACGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTGTTATATTCCCTTTCCTGTTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACGTGAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTGCTTCTTCTAATGGCACTATTTTCAATCTATTGTGGCTTAATCTACAATGAATTTTTTTCTGTTCCTTTTCACATATTTGGTGCATCAGCTTACAAATGCCGCGATAGTTCATGCAGGGATGCACATACTATTGGCTTAATCAAATACCAAGATCCATACCCGTTTGGTGTAGATCCCAGCTGGCGTGGAAGTCGATCAGAATTGCCTTTCCTAAACTCTTTGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCACATATGAACTTGGGGATTGTATTGAGTTATTTTAATGCTCATTTCTTTCGAAACTCACTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTATCAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACAGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCTCTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATACTGAGAGGTTTCAAGGTCGTAGTTATGGTATACTGAATACCTCTGAGGTGGATCTTGAGGCTGAGCCTGATTCTGCCAGACAACATCATCATGAAGAATTCAATTTCAGTGAGGTCTTTGTTCATCAAATGATCCATGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATGCCCTTCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAGGCCTTTTTCATTTGCCTCCTTAACAGAGGATGACGATTGA 2463 0.4101 MEQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCGEMSRKLRFFKDQISKAGLMSSSRTELQPDIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSNHSRVVLDERELRENVYSNDAYVETVSLLEQEMRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNLAPADEQIMDPVSADMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLEAGIRHRNKALASVADHLAKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLFAKTQMQEALQRATFDSNSQVGIILHPMDAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTVIFPFLFALMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLIKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVAHMNLGIVLSYFNAHFFRNSLDIRYQFVPQMIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGILNTSEVDLEAEPDSARQHHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDDD 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02934 820 Coils Coil 100 127 - -
Gma13g02934 820 Pfam V-type ATPase 116kDa subunit family 37 812 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma13g02934 820 PANTHER VACUOLAR PROTON ATPASES 5 820 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma13g02934 820 PIRSF ATP6V0A1 9 820 IPR026028 GO:0000220|GO:0046961
Gma13g02934 820 PANTHER VACUOLAR PROTON ATPASE A1 5 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02934 Gma-Chr13 43902103 43917255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02934 1 813 Primary Pumps ATPases(2) AT2G28520 80.859 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02934 K02154 - gmx:100776037 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02934 13 43902103 43917255 Gma13g02934 13 43902103 43917255 ECH
Gma13g02934 13 43902103 43917255 Gma15g00426 15 3625419 3636122 GST
Gma13g02934 13 43902103 43917255 Gma12g00648 12 5442909 5455228 PCT
Gma13g02934 13 43902103 43917255 Gma11g01336 11 11579777 11590550 PCT
Gma12g00648 12 5442909 5455228 Gma13g02934 13 43902103 43917255 PCT
Gma11g01336 11 11579777 11590550 Gma13g02934 13 43902103 43917255 PCT