Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02928 ATGGAGAGTGACACAAACACCACATTTTCTCACTCCTCAAATACTACCCCTTCTTCCCCTCCCCAACAAGTTCAAGTTGTCATGATCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCACACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTGTACGGATGTGCAGGTGCAATTTGCCACCTCCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCGAATCTCGTGGCTCTAATTTGCATGGAAATGGCACAAACACAAACTCCACAGGAATCACCACAACAATCTGTGGACAACTTCATTTCAAGCCCTTCACACAGCAGCGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAATAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 597 0.4623 MESDTNTTFSHSSNTTPSSPPQQVQVVMIPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICHLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMAQTQTPQESPQQSVDNFISSPSHSSGYQNNLNFFEENTNNLNSLWEPLWT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02928 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 195 - -
Gma13g02928 198 MobiDBLite consensus disorder prediction 1 22 - -
Gma13g02928 198 Coils Coil 109 136 - -
Gma13g02928 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 195 - -
Gma13g02928 198 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Gma13g02928 198 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02928 Gma-Chr13 43838719 43840847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02928 26 198 AS2 family AT2G28500 67.027 1.09e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma13g02928 LOB 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02928 - - gmx:100819336 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02928 13 43838719 43840847 Gma13g02928 13 43838719 43840847 ECH
Gma13g02928 13 43838719 43840847 Gma15g00431 15 3686146 3687823 ECH
Gma13g02928 13 43838719 43840847 Gma15g00431 15 3686146 3687823 GST
Gma13g02928 13 43838719 43840847 Gma12g00641 12 5368511 5370501 PCT
Gma13g02928 13 43838719 43840847 Gma11g01343 11 11660483 11662956 PCT
Gma12g00641 12 5368511 5370501 Gma13g02928 13 43838719 43840847 PCT
Gma11g01343 11 11660483 11662956 Gma13g02928 13 43838719 43840847 PCT