Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02924 ATGGATTTGGTAGCCAGTTGCAAGGAAAAATTGCAACATTTCCGTATAAAAGAGCTCAAAGATGTGCTCACTCATTTGGGACTCTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGAATATTAGCTATCCTCTCAGAGGACCAAGTTTCCAAATTGTGGACCAAGAAGAATGCTGTTGGAAAACAAGAAGTGGCCAAATTAGTGGATGACACGTTTAGAAAGTTGCAGGTATCCGGGGCCATTGATCTTGCATCAAAGGGACAGGGTGCCTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGACGATTCCTATCAATCAGATACAAAGATTCGCTGTCTCTGTGGAAATGTATTCGATACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGCCATGCGTCACAGCACATCAGCTGTGTTATTATTCCAGAGAAACCTATGGATGGAATCCCACCCATTCCTGATAAATTCTACTGTGAAATATGTCGACTTGATCGGGCAGACCCGTTTTGTATTTCAGTGACACACCTTTTGTTTCCGGTGAAGTTGACCACAACCAATATTCCCACTGATGGATCAAACCCAGTACAGAGTGTGGAAAGAATGTTTCAACTCTCAAGAGCAAACAAGGAGTTGGTATCAAAATCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAGTTTGCAGATCTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGACACTGGTCCAGTTATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTGTAGGGGTCCGTATTGTTAAAAGGCTCAGTATGCCAGAGGTCCTAAGCATGATTCCAGAGGAGTCTAATGGTGAGCATTTTGAAGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTCGTTTCAGACACGTTTAGCATCAATCTCCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGGTCAAGGAAGTGGCAGTGCCCCATATGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCTTACTTCAATCGCATCACCACTCTGATGAAAAATTGTGGAGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGGGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGACTCTTGCTCAATGGCACCGTCCAGATGGATCCCTCTTTGTTTCTACTGATGAAGTCAAGAGCATGGAAAATATAAAGCTCAAACAGGAAGGTGTTTCAGATAGTCCTATTGGTGTTTTAAAACTTGGCATCAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAACACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATTTAGAAAATCATGAACATGTTATTATTCCAATGAGCAGCAGTGATACTGGAAGTGGCCGGGATGAAGATGATCCTAGCGTAAATCAGGGTGGTGGTGAGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCTGTGTTTAACAATAATATTGATTCAGCTTATGGATATAATGTTAATAACGCTTCTGCTCTGATGGGTGATGCACAAGTTATTATTCTTAGTGATTCAGAAGAAGACAATGATGTATTGATGTCTCATACTCGTATAACTGGGTACAAAAATAATCAAACTAGTGATGCAGTTGATGTTTACTCAGTGCTACAGCCTGGAATTATTGATCCATATAGGGAAGATCACAATCCTGGAGTTTTTAATAATCCCAGTGAAGATGATTTTGGTATGCCCTCCCTCTGGCCATTGCAATCTGGAACTCCAGCAGTCCCGGGATTCCAATTATTCAGTTCTGAAGTGGAGGATGATGTGTCAGACGCATTGATTGATTTGCATCATGGCAATATTAATTGCTCCTCGTCACTGAATGGTTATACGTTGGCTCCAGATACTTTGGGATCTGGCACTCTCATACCAGATTCCTCAGCAGGTCGACCTGACGATGATTTAAATGGTGGGTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCATCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCTATGCAGCATGAACTGAGAGATCATGCAGATGGGTCAAATGGTGTCTTCACTGAGGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCAGTGGCAGTAATGGTGACACTTCCTCTGCAAATGAATTGAATTTGAGACCACAAATTACACCCAGAGAAGATGCCAGAGATTCTTTGACAGATGCTGCTCCTTTGCTTCTTGGTGTGAATGATGTTAGACCTGACAAGGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCCCGCCAAAAGCGTTCAAAACTGAAGAAAGTTGAGCAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 2643 0.42 MDLVASCKEKLQHFRIKELKDVLTHLGLSKQGKKQDLVDRILAILSEDQVSKLWTKKNAVGKQEVAKLVDDTFRKLQVSGAIDLASKGQGASDSSNVKIKGEIDDSYQSDTKIRCLCGNVFDTEPLVKCEDTRCHASQHISCVIIPEKPMDGIPPIPDKFYCEICRLDRADPFCISVTHLLFPVKLTTTNIPTDGSNPVQSVERMFQLSRANKELVSKSEYDVQVWCMLLNDKVSFRMQWPQFADLKVNGLPVRAINRPGSQLLGANGRDTGPVITPYTKDGINKISLTGCDARIFCVGVRIVKRLSMPEVLSMIPEESNGEHFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPICLKNYALENIIIDPYFNRITTLMKNCGEEIAEVEVKPDGCWRVKAKNESERRELGTLAQWHRPDGSLFVSTDEVKSMENIKLKQEGVSDSPIGVLKLGIRKNSNGVWEVSKPENTNTSSGNNRLNEDLENHEHVIIPMSSSDTGSGRDEDDPSVNQGGGEHIDYSTTNGIEMDSVFNNNIDSAYGYNVNNASALMGDAQVIILSDSEEDNDVLMSHTRITGYKNNQTSDAVDVYSVLQPGIIDPYREDHNPGVFNNPSEDDFGMPSLWPLQSGTPAVPGFQLFSSEVEDDVSDALIDLHHGNINCSSSLNGYTLAPDTLGSGTLIPDSSAGRPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSMQHELRDHADGSNGVFTEDWISLSLGGGASGSNGDTSSANELNLRPQITPREDARDSLTDAAPLLLGVNDVRPDKASRQRSDSPFSFPRQKRSKLKKVEQHFWSSGNGR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02924 880 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Gma13g02924 880 Pfam SAP domain 12 42 IPR003034 -
Gma13g02924 880 MobiDBLite consensus disorder prediction 541 566 - -
Gma13g02924 880 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Gma13g02924 880 MobiDBLite consensus disorder prediction 844 870 - -
Gma13g02924 880 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 809 - -
Gma13g02924 880 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Gma13g02924 880 Gene3D SAP domain 1 60 IPR036361 -
Gma13g02924 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Gma13g02924 880 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Gma13g02924 880 SMART PHD_3 114 166 IPR001965 -
Gma13g02924 880 SUPERFAMILY SAP domain 1 64 IPR036361 -
Gma13g02924 880 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 809 - -
Gma13g02924 880 SMART sap_9 11 45 IPR003034 -
Gma13g02924 880 MobiDBLite consensus disorder prediction 839 880 - -
Gma13g02924 880 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Gma13g02924 880 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Gma13g02924 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 447 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02924 Gma-Chr13 43799337 43807855 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02924 - K22403 gmx:100803144 1749.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02924 13 43799337 43807855 Gma13g02924 13 43799337 43807855 ECH
Gma13g02924 13 43799337 43807855 Gma12g01612 12 36062425 36074203 GST
Gma13g02924 13 43799337 43807855 Gma12g00633 12 5299691 5310080 PCT
Gma13g02924 13 43799337 43807855 Gma11g01351 11 11736875 11747304 PCT
Gma12g00633 12 5299691 5310080 Gma13g02924 13 43799337 43807855 PCT
Gma11g01351 11 11736875 11747304 Gma13g02924 13 43799337 43807855 PCT