Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02923 ATGGAAATTGATCTGAATGATGATGCAGTGACGAGTGAGGCTGAAAAGAGTGCGTCTTGCAATGAGGAGTGTGAGAAAGGTGCTGCTTTTGCGTTGTCGTCTTCAACATGTTCATCCTCTGGCTCCTCCTCCGCACGTGTGTCTTCTTCTTATCTTGAGCTTTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCGAAGAAAGGGAATGTGGTGGTCTATTTCCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTCTAGAGTTGTCAATATTCAGCTACTCGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCGGGCTGAGTATTTAGAGGGAAAAGAGCTTGAGGAATTGGGAACAGATGAAGAGGGAAATGAAGCAACACCTACAAAGTCAACCCCTCACATGTTTTGCAAAACTCTTACAGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCGTTTGGATTATAAGCAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGATTTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGgtcaaccaaggcggcatctgctcactactggctggagtatttttgttagccaaaagaatcttgtttctgagatgcagttctctttcttaggTGTGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCGAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCGGAAAGAAGgtgtactagtggtatagtgactggaatgagtgatttggatccctataaatggcccaagtcaaaatggaggtgcttgatgGTCAGATGGGATGAGGATATTGAGATTAGTCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTTCGTCTCTTCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGCTGCCACACCCAGTCACCTCACCACTGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCAGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACGGGTTTTATGTCACTATATTATGGATGTGACAAAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTGCATCAACTGGAGTGAGAAAGATTTCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTTTGCAGGCTTTTCGGAAACTAACATGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTAACAGGAAAGGCTGATTTGAACTTTGGTTCTTGGGGCAAACCCAATGTCAGTTACTCAAATAACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTCCCTTATGGTGATATTCACAATGCTGGTCAAGGTAGCAGCATCTTGTGCTCCAAACCGACCAATTTCCAACGAGAGAATATCCCATTTAACACTCCTTCTACTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCAGACATCACAATTCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTACTGCTTCTTTAGGGGCAAACATGAGGATTCCAAAGGATGACAATTTCAAGGGGCAGGTAAAAGCTTGTAAACTATTTGGAATTTCCTTGTCCGGGGAAACTACCGCCCAAAATTTACAGAACTCTGCTAAAAGAAGCTGCACAAAGGTGAGCGACGATAGCAACAGAGTTATATTGTGA 2064 0.4026 MEIDLNDDAVTSEAEKSASCNEECEKGAAFALSSSTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMEMPTYDLQPQIFSRVVNIQLLANKENDEVYTQVTLLPRAEYLEGKELEELGTDEEGNEATPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPRLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSEMQFSFLGVGENGELRLGIRRAARPRNGLPESIVGSQSYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEISHQDRVSPWEIDPSSSLPPLSIQSSRRLKKLRPGLQAATPSHLTTGGSGFMDSEESVRSSKVLQGQENTGFMSLYYGCDKVTKQPEFEIRSPSHPNLASTGVRKISAAEFMRVHPSSFAGFSETNMFPRVLQGQEICPFRSLTGKADLNFGSWGKPNVSYSNNNLHQATKPSFHSLGPEVIQTAYFPYGDIHNAGQGSSILCSKPTNFQRENIPFNTPSTQSGIMRNEVGRSDITIPNEQKLQDNISGTASLGANMRIPKDDNFKGQVKACKLFGISLSGETTAQNLQNSAKRSCTKVSDDSNRVIL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02923 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g02923 687 SUPERFAMILY DNA-binding pseudobarrel domain 153 274 IPR015300 -
Gma13g02923 687 Pfam B3 DNA binding domain 161 263 IPR003340 GO:0003677
Gma13g02923 687 Gene3D - 326 398 - -
Gma13g02923 687 Gene3D - 159 264 IPR015300 -
Gma13g02923 687 Pfam Auxin response factor 288 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g02923 687 SMART B3_2 161 264 IPR003340 GO:0003677
Gma13g02923 687 MobiDBLite consensus disorder prediction 418 441 - -
Gma13g02923 687 CDD B3_DNA 159 262 IPR003340 GO:0003677
Gma13g02923 687 MobiDBLite consensus disorder prediction 413 441 - -
Gma13g02923 687 ProSiteProfiles B3 DNA-binding domain profile. 161 264 IPR003340 GO:0003677
Gma13g02923 687 PANTHER AUXIN RESPONSE FACTOR 10 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02923 Gma-Chr13 43789998 43795584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02923 48 685 B3 DNA Binding Superfamily AT5G60450 57.385 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g02923 B3 5.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02923 - - gmx:100812909 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02923 13 43789998 43795584 Gma13g02923 13 43789998 43795584 ECH
Gma13g02923 13 43789998 43795584 Gma12g01613 12 36077843 36084183 GST
Gma13g02923 13 43789998 43795584 Gma12g00630 12 5270323 5277237 PCT
Gma13g02923 13 43789998 43795584 Gma11g01354 11 11764968 11771172 PCT
Gma12g00630 12 5270323 5277237 Gma13g02923 13 43789998 43795584 PCT
Gma11g01354 11 11764968 11771172 Gma13g02923 13 43789998 43795584 PCT