Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02917 ATGATGTCTCAAGAAGCAATATCTGTTCCTTCCAACAACCTCAGAGACCCCTCGGTTCAACTTCATGAACCAAACTCAAACTCAAATTCAAACCCTAATAATCCTAACCCTAATTCACTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACCAACcgattcatctgcgaagtgtgcaacaagggtttccagagggaccagaacctgcagctgcaccggcgagggcacaacttaccgtggaagctgcggcagagaaacaaGGAAGAGGTGGTGAAGAAGAAGGTGTACGTTTGTCCAGAGAAGAGTTGTGTGCACCACGACCCTTGCAGAGCCCTGGGAGACCTCACCGGAATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCACGGAGCCTTTTGTGACGCCATGGCGGAACAAAATGCGAGGCTTCCGGCGGTTTTATCAAACCTTGGAAGCGAGATTTTGATGAATGCTGCTCAAGGTCCAAGAGTAATGCCACAGGCTTTGCAATTACATGGGTTTCATAATTCAGAGTTTGGTGGGCCAGGCTCAGAACCATACATGGGGAATTTTGCGGATGTGAACCATGTCGAGCATAATAAGCTAAGGATGCCACTATGGCTAGACCAGACCAATAATATTCCTCTTCAGCTTAATCATCATCATCATCATCATCCTCTAAGCGTCTCAAGCAACAACTCTTCAAGTTTGTTCTCACCAGGAACAACCTTGGCTGAGGCAAACAACATGTTTGGGACATCATCGTCGTCACAGGGACAGTGGCTGAATTACCGATACCACCCAGAAGCATCATTTACACATGCCAACGTTTCTATTCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGACTTGTCGCATAGTGTGAGCTCTTTGTACCAAAGTCACATGGAACCTACAAGGATGAGTGGTGGTAATAATAATTTGGCCTTCGACAACTCCAACTTTGGCCTGTTGGACCCGAACATGTCAAGCACGTCCAGCAACAACAACAACCGCTACAACAATAACGTGGTTGAAATTCAGAAATTGTTCAAGCAAGGAAACCAGGCTGTTGAGAACTTCAACCACATGGTGAATTCCCAAGCAAGCACCAACAATATTATTGGAGGTGGGTTTTCATTGAGTAGCACCAAGGGTTTGGAGCACATGGTGATGCCGCGGATTGAAGAGTGGGAGAGTGGAGAACCAGAAATAATGCAGAAGCAACAACTACGTTCAAGTACTTCAAACGCTACTGAAGAGCACTTAACCAAAGATTTCATGGGTATTGGACCAGTGATCAACCTGCAAAGCCAGTTCCGTGGACATTACTGA 1530 0.4255 MMSQEAISVPSNNLRDPSVQLHEPNSNSNSNPNNPNPNSLKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRNKEEVVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHGAFCDAMAEQNARLPAVLSNLGSEILMNAAQGPRVMPQALQLHGFHNSEFGGPGSEPYMGNFADVNHVEHNKLRMPLWLDQTNNIPLQLNHHHHHHPLSVSSNNSSSLFSPGTTLAEANNMFGTSSSSQGQWLNYRYHPEASFTHANVSIPHGLKLEQEENKGDLSHSVSSLYQSHMEPTRMSGGNNNLAFDNSNFGLLDPNMSSTSSNNNNRYNNNVVEIQKLFKQGNQAVENFNHMVNSQASTNNIIGGGFSLSSTKGLEHMVMPRIEEWESGEPEIMQKQQLRSSTSNATEEHLTKDFMGIGPVINLQSQFRGHY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02917 509 ProSiteProfiles IQ motif profile. 498 509 IPR000048 GO:0005515
Gma13g02917 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 498 - -
Gma13g02917 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Gma13g02917 509 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 8 498 - -
Gma13g02917 509 Gene3D Classic Zinc Finger 49 122 - -
Gma13g02917 509 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gma13g02917 509 MobiDBLite consensus disorder prediction 1 43 - -
Gma13g02917 509 Gene3D Classic Zinc Finger 125 204 - -
Gma13g02917 509 MobiDBLite consensus disorder prediction 1 55 - -
Gma13g02917 509 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Gma13g02917 509 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Gma13g02917 509 SMART c2h2final6 112 142 IPR013087 -
Gma13g02917 509 SMART c2h2final6 147 167 IPR013087 -
Gma13g02917 509 SMART c2h2final6 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02917 Gma-Chr13 43734906 43737745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02917 26 204 IDZ Gene Family AT3G50700 80.556 9.58e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02917 zf-C2H2_jaz 8.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02917 K25870 - gmx:100811687 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02917 13 43734906 43737745 Gma13g02917 13 43734906 43737745 ECH
Gma13g02917 13 43734906 43737745 Gma12g01619 12 36214065 36216411 GST
Gma13g02917 13 43734906 43737745 Gma12g00625 12 5210681 5213421 PCT
Gma13g02917 13 43734906 43737745 Gma11g01359 11 11839451 11841738 PCT
Gma12g00625 12 5210681 5213421 Gma13g02917 13 43734906 43737745 PCT
Gma11g01359 11 11839451 11841738 Gma13g02917 13 43734906 43737745 PCT