Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02909 ATGAGTGCTCATCAAAAAGAAAAACATAACGCACCTTCGTCCAAACCAACGGTTTCTCATCCACTTCACAAGGTGGATGATCCAATGGGGGTGACCAATGAAAACGAAACCTTGCGTGTTAGTAATCAATGGAAGCGACAGAATCTTCTTCAGCTGGAAATACCGGCCAGAACATCGGAAGAGTCTTCTTCTCAGGATTTTGTTGGAATAAGGATGCCATTGACGCCAAGTCCAACTCCAAGTCAGAAAAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAAAGCCTCCTTCTTCATCATCCAGAGCCAAACCATCCATGAGAAACATCTTACCAAAATTCGGCTTCAGGAACCGTGCACCATCGATATCGCTTGATGTTGAAAAGGGTGTTACTACTGCTGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGTCTTCAATCCCAAGATCAGTGTCTCTCACGAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCATTACCGGTTGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTGTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACTCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAACACCAAAGAAAAAGGCATAAGGAGACTGGATTCGGTTTTCCGTATTATTCCTTCCACTCCTCGCGTAATTGAAGTGAATGAAACAAGAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCTGTGTGTAGAATTTGTTTGGTTGATCTATGTGAAGGAGGCGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACTTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTAAGGATCCGAAGTGTTCGAGCTCAGAATACTAGAGCAAGGTCCGAACAGGGAGATGACTTCAGGGCTTGGCAGGAACTTCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGTACTGGGTCTACTCTCCTCCGTAACATCATCGACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAGGCACAACAGCGTGGTTCTTCAGCGATGACACAAGAAGGACTATGA 1422 0.4473 MSAHQKEKHNAPSSKPTVSHPLHKVDDPMGVTNENETLRVSNQWKRQNLLQLEIPARTSEESSSQDFVGIRMPLTPSPTPSQKRVNFLVTSRSVDAPKPPSSSSRAKPSMRNILPKFGFRNRAPSISLDVEKGVTTAAQEGSFSGHQEKSSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRLDSVFRIIPSTPRVIEVNETRKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVRAQNTRARSEQGDDFRAWQELPVLVIVSMLAYFCFLEQLLVGRMRTKAIFISLPFACVLGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQAQQRGSSAMTQEGL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02909 473 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Gma13g02909 473 MobiDBLite consensus disorder prediction 34 82 - -
Gma13g02909 473 CDD RING_CH-C4HC3_MARCH 260 308 - -
Gma13g02909 473 SMART ringv_2 259 308 IPR011016 GO:0008270
Gma13g02909 473 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Gma13g02909 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 315 IPR013083 -
Gma13g02909 473 SUPERFAMILY RING/U-box 256 311 - -
Gma13g02909 473 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 463 - -
Gma13g02909 473 MobiDBLite consensus disorder prediction 1 82 - -
Gma13g02909 473 PANTHER OS02G0165000 PROTEIN 27 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02909 Gma-Chr13 43667025 43671547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02909 248 314 C3H Transcription Factor Family AT2G37950 45.588 6.83e-14 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02909 13 43667025 43671547 Gma13g02909 13 43667025 43671547 ECH
Gma13g02909 13 43667025 43671547 Gma12g00603 12 5056879 5061367 PCT
Gma13g02909 13 43667025 43671547 Gma11g01648 11 17830957 17836511 PCT
Gma12g00603 12 5056879 5061367 Gma13g02909 13 43667025 43671547 PCT
Gma11g01648 11 17830957 17836511 Gma13g02909 13 43667025 43671547 PCT