Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02903 ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA 864 0.5104 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02903 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 MobiDBLite consensus disorder prediction 1 25 - -
Gma13g02903 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Gma13g02903 287 MobiDBLite consensus disorder prediction 1 17 - -
Gma13g02903 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Gma13g02903 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Gma13g02903 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Gma13g02903 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g02903 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02903 Gma-Chr13 43629859 43631913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02903 1 287 Major Intrinsic Protein MIP AT2G37170 78.397 4.24e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02903 K09872 - gmx:732581 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02903 13 43629859 43631913 Gma13g02903 13 43629859 43631913 ECH
Gma13g02903 13 43629859 43631913 Gma12g01628 12 36307836 36309077 GST
Gma13g02903 13 43629859 43631913 Gma12g00670 12 5833323 5835873 PCT
Gma13g02903 13 43629859 43631913 Gma11g01642 11 17791663 17793361 PCT
Gma12g00670 12 5833323 5835873 Gma13g02903 13 43629859 43631913 PCT
Gma11g01642 11 17791663 17793361 Gma13g02903 13 43629859 43631913 PCT