Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02897 ATGAAGGAAACAGACAAGAGTTTGGATCCGCAGCTGTGGCACGCGTGCGCCGGCGGTATGGTTCAGATGCCGCCGGTGAACTCCAAAGTGTTTTATTTCCCGCAGGGACACGCGGAACATGCGCAGTCCAACGTCGATTTCGGAGCGGCGAGGATTCCGATTCCGCCGCTCATTCTGTGCCGCGTGGCAGCCGTGAAATTCCTGGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGCTGCGGCTGGTTCCTCTCAGAAACTCGGAGCTCGACTACGAAGACAGCGACGCTAACGGCGAGGCGGAGGGTTCGGAGAAGCCGGCGTCGTTCGCGAAGACGTTAACCCAGTCAGACGCGAACAACGGCGGCGGATTCTCCGTTCCGCGATACTGCGCGGAGACGATATTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAGGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACTACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCGGGGGATTCCATCGTGTTTCTGCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGAGTTGGTGGGCCAGAGGGGCCGTGCGGGTGGAGCAGTTATGGTTCTGGAGGGCATGGGCTTGGGCCATACGGGGCCTTTTCGGGTTTTATGAGGGAGGAGAGTGGGAGGGCGAAGGTGAGTGGTGAATCAGTGAGAGAAGCAGTTACTTTGGCGGCTAGTAACCAAGCGTTTGAGGTGGTTTATTATCCTCGAGCGAATACTCCTGAGTTTTGTATTAGGACCTCGGCTGTGAGAGGGGCTATGAGGATTCAGTGGTGTTCCGGTATGAGGTTCAAGATGCCTTTTGAGACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCAGCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTCCCCCTTGACGTTCAGTTTCCGATACCATCGTTTTCAGGCAACCCCTTTGGGTCTTCTAGCTCTAGCAGCCCCTTTTGTTGTCTCTCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATTCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCAACTAAAGTCCACCAGCTTAATTTGCACGCCGGGATTTCTAATGCTAAGAGTAAAGAAAGTCTATCATCCTTGCTCTCCATGGGAAATTCTAACATGACTTTGGAGAAATCTGATCATGTCAAGAGACACCATTTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTAGATCTTCTAGTGATGTCGCCACGGATGATGAGAATAAGGAAAAGAAGAAGAAGGGATTTCTTAGTGACTCCCAGTCTTCAGTTTCACCAGGAAATTTATCTTCTACTGCCGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAGTCTGAAGATGTAGGACGGACACTTGACTTGTCCTGCCTTTCTTCTTATCAAGAGTTGTACATGAGACTCGCTAACATGTTTGGAATAGAGAGGTCTGATATGTTGAGTCATGTTCTCTACTGCGACTCATCCGGTGCTCTTAAGCAAATTGGAGAGGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACCATTCTGACGGATTCAAACAACAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGATTGGATGCTGCATCAAATAAGACAGGTCCTCTCAGTATATTTGCTTAA 2013 0.5107 MKETDKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGAARIPIPPLILCRVAAVKFLADPETDEVFARLRLVPLRNSELDYEDSDANGEAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIARDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEGPCGWSSYGSGGHGLGPYGAFSGFMREESGRAKVSGESVREAVTLAASNQAFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVSWDEPDLLHNVKRVSPWLVELVSNVPIIHLAAFSPPRKKLRFPLDVQFPIPSFSGNPFGSSSSSSPFCCLSDNAPAGIQGARHSQIGISLSDLHLNNKLQLGLLPTKVHQLNLHAGISNAKSKESLSSLLSMGNSNMTLEKSDHVKRHHFLLFGQPILTEQQISRSSSDVATDDENKEKKKKGFLSDSQSSVSPGNLSSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLSSYQELYMRLANMFGIERSDMLSHVLYCDSSGALKQIGEEPFSEFMKTAKRLTILTDSNNKDSRRVWITGTRNAEHGLDAASNKTGPLSIFA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02897 670 Gene3D - 554 641 - -
Gma13g02897 670 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Gma13g02897 670 ProSiteProfiles PB1 domain profile. 557 637 IPR000270 GO:0005515
Gma13g02897 670 CDD B3_DNA 109 210 IPR003340 GO:0003677
Gma13g02897 670 MobiDBLite consensus disorder prediction 516 531 - -
Gma13g02897 670 PANTHER AUXIN RESPONSE FACTOR 2 646 - -
Gma13g02897 670 SUPERFAMILY DNA-binding pseudobarrel domain 105 211 IPR015300 -
Gma13g02897 670 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Gma13g02897 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 646 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g02897 670 SMART B3_2 110 212 IPR003340 GO:0003677
Gma13g02897 670 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g02897 670 MobiDBLite consensus disorder prediction 510 542 - -
Gma13g02897 670 Gene3D - 300 372 - -
Gma13g02897 670 Gene3D - 108 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02897 Gma-Chr13 43555246 43558047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02897 4 635 B3 DNA Binding Superfamily AT4G30080 59.254 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g02897 B3 5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02897 - - gmx:100808472 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02897 13 43555246 43558047 Gma13g02897 13 43555246 43558047 ECH
Gma13g02897 13 43555246 43558047 Gma12g01641 12 36558721 36561798 ECH
Gma19g01716 19 46454120 46457693 Gma13g02897 13 43555246 43558047 ECH
Gma10g00491 10 4885321 4890628 Gma13g02897 13 43555246 43558047 ECH
Gma13g02897 13 43555246 43558047 Gma12g01641 12 36558721 36561798 GST
Gma13g02897 13 43555246 43558047 Gma12g00677 12 5940115 5943771 PCT
Gma13g02897 13 43555246 43558047 Gma11g01633 11 17685358 17688537 PCT
Gma12g00677 12 5940115 5943771 Gma13g02897 13 43555246 43558047 PCT
Gma11g01633 11 17685358 17688537 Gma13g02897 13 43555246 43558047 PCT