Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02896 ATGTCTAAGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTTAATGGTCTCTCAGACGAGATTTTTGATGATGTCATTAACTTTTTTGATTTCCCGCTGGAAGACGTGGAAGCTAATGGCGTCGAAGAAGACTGGGATGCTCAATTAAAATGCCTTGAAGACCCGCGTGTTGATGTTTATACAGCATCATCAGCTGGGTTGTGTGCCAAAACTCAAAATGAAAAGCCCCAACTTGGAATGAAGTTCTCTGCTTCTGGAAATGGGATTTCCCCAATAAAACAGCTGGGAAAAGCTCCTGGACCAGTATATGGAAAGACCATTACTCACCAGAATGTCACTTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGCAGTTCGTCCTCAGTTGAGAATTCCAACTTTGATCGACCTGTCATCCCAGTAAAGCGGGCTCGTAGTAAACGTCAGCGTCCTTCAAGCTTCAGTCCTCTATTTTCAATTCCTTTCATCCTTAATTCGCCGGCTATGCAAAATCATCAAAGGATAGCAGCTGCTGACTCAGATTTTGGAACAAATGTTGCTGGGAATCTATCAAACAAACTAAAAAAGCAGAAAAAAAAGGATTCGTCCCTGCTATTAGATGATGTTGAGATGATGAGATCCTCATCACCGGAGTCAGGTTCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAAACCCCACAATGGAGAGAGGGACCTGTGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACCGGTCTGGCCGCCTCTTTCCTGAATACCGACCGGCAGCTAGCCCGACTTTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTTGTGGAGATGAGAAGCAGAGCCATCCAGGAGCCTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATGCTGTAGGATAA 984 0.4431 MSKDIANMKDSWFFDNNFNGLSDEIFDDVINFFDFPLEDVEANGVEEDWDAQLKCLEDPRVDVYTASSAGLCAKTQNEKPQLGMKFSASGNGISPIKQLGKAPGPVYGKTITHQNVTSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSSFSPLFSIPFILNSPAMQNHQRIAAADSDFGTNVAGNLSNKLKKQKKKDSSLLLDDVEMMRSSSPESGSPRKCMHCEVTKTPQWREGPVGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRAIQEPVRGSMLASSNLHGNAVG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02896 327 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 305 - -
Gma13g02896 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 296 - -
Gma13g02896 327 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Gma13g02896 327 Gene3D - 232 313 IPR013088 GO:0006355|GO:0008270
Gma13g02896 327 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Gma13g02896 327 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Gma13g02896 327 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Gma13g02896 327 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Gma13g02896 327 PANTHER GATA TRANSCRIPTION FACTOR 26 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02896 Gma-Chr13 43543246 43547161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02896 15 305 C2C2-Gata Transcription Factor Family AT1G08010 37.627 1.53e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma13g02896 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02896 - - gmx:100813303 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02896 13 43543246 43547161 Gma13g02896 13 43543246 43547161 ECH
Gma13g02896 13 43543246 43547161 Gma12g01642 12 36570898 36575542 ECH
Gma13g02896 13 43543246 43547161 Gma12g01642 12 36570898 36575542 GST
Gma13g02896 13 43543246 43547161 Gma11g01632 11 17655816 17667496 PCT
Gma11g01632 11 17655816 17667496 Gma13g02896 13 43543246 43547161 PCT