Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02884 ATGAGCAATTTAAGGCCTGAATCTCACGTAGCACAACAAATTAGGCGTGAAAAACTGAGAATCCAGAACAGTTATCAGCCTTCACACGAATTCCCTAACAATCTTGAACAGTTATCTTTACACCCGGGGTTTAACAACTTGGACCTTGTTCAAGTTAGGAATGTTAGAAATGCTAACATGCTTGATGAACTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACCTCTTCGTCTGCTGCAAGGAACGCGTTGGAGTATCACCAAGAACAAGGTGCTGCAGCTGAACCCAGTAATAGGCTGCTGCTGATGAATCAGTATGGTTCATTTCCCCATTCCATGTCTGCAATTCATTCTTCCCATAAACAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTACCCCCCATCAAGGATCTGATTGGTTTGTAAACTATGCAAGCAATGCCAATTCTTTTTTGTCTGCTGAGCTCAACAACAATGTGTCTGCTTACAATGAACTTATGGATGTACATTGTAGCAATGCATCTGGTGAAATCAGTGGTAGAGAAATGCATAAGCAAGGTGTACTGCATCATAATTCTCCTCCTTCATCTCCACTTTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCTTCTTTCAGTGCTCACACTAGGCAAGACATGGCTTCACTGATGCAACAAAATGAACATAGCATTTGGGTGGGGAATGCTAGTGAAGCTGAGCTTCAACAACCAAGTTATGAAAGCCAGCCAAATCATGAGTTGCGTTTTGGGTGGACAAATCGAACAATTGCTTGTGATTCACTTCCTCAGAGCTTGTCCTTGTCACTTTCATCAAATGCACAACCTAAGCCTTCAGTTTCTCACCTAGAACAAGGGTCTGCGTCTGATGATCCTCAGTGTTTGAAGCATATGAAATCTATTGTTTCTAGAGATTGTGGGAAATCAGTTCAAGATCAGGTGGAAATACCTTCAAAGAGTACTACTACTATTACTTATCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTCAAGAGTTCAAGGTTCTTAAAGTCTGCTCAACAATTGTTGGATGAGATTTGCTGTCTATCTGATGCAAAATTTGGAAAATCATACGATGTTTCAAAGAGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCTGATACTGTCACTGGGGTTGCTGCAAAAGGTAGTAATTCAGGTTCTTCATCAACCACGTTGTATAATGTTTCAAAGGAAAATAGGGCCGATCCGGGAGTTGGAAGTAGCTTTGGTCTTTCCTCGCGGTCAGATTATCAACATAAGAAAGCAAAGCTACTGTACATGCAAGAGGAGGTTAGCCGGCAATGCAAACAGTACCATCTACAAATGCAAATGGTAGTTTCATCGTTCGAGTCTGTAGCGGGTCTTGGTTCTGCTACTCCTTACATCCCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCAATATCAGATCAGCTCAAGCTTATAAGTGAGGCCTTGGGAGAGGATTTGTCAATACCCTGCAGCACCAGTACTTGTAGTAATAAAGCTGACACTACTACTATGGCAAGGGTAAGATGCGGTAGTAGCATGGACCAAAGCTTCTTTCTGAAGAACAAATGTGTAAAGGGTACCACGGAACTTCTTGATGAACCCCCCCAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCTGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTTCGAGTGTGGAAACCAATGGTTGAGGAAATACACACGCTTGAAACAAAAGCAACAGGCTCCAAGGACAATTGTGGTATAAACGAGGGAACTTCTTCTGCCACTGGAGGTGATACCAGCCACCCTAGAGCTTTGGGCAATATTGGTCTGAATTCAATACCTGAAACCCAATTTCAGGGTATAGATATGGGGTCATCCATAGCTGCAAATGCTGAGGAAAGTGGGTTAAACCCAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAGTGACTTCAACCATGGATGGAACACTGATGGGGTTTGTGCCATACCGACACGGCGGCGTTGAGGTTGGTGGACTAGGGTCTGTGTCGCTAACATTGGGTCTTAGTCATGGCGTTGAAGGTGTACAAAACCAACAACAATTGCAAGAGGAGCAGCTTAGGCATGACGTTGGAGGGCACATGATCCATGAATTTGTGGGCTGA 2361 0.4329 MSNLRPESHVAQQIRREKLRIQNSYQPSHEFPNNLEQLSLHPGFNNLDLVQVRNVRNANMLDELAVYSSEMPNFSTSSSAARNALEYHQEQGAAAEPSNRLLLMNQYGSFPHSMSAIHSSHKQQCELRNLGNWRNSTPHQGSDWFVNYASNANSFLSAELNNNVSAYNELMDVHCSNASGEISGREMHKQGVLHHNSPPSSPLYQNALQDIVKSASFSAHTRQDMASLMQQNEHSIWVGNASEAELQQPSYESQPNHELRFGWTNRTIACDSLPQSLSLSLSSNAQPKPSVSHLEQGSASDDPQCLKHMKSIVSRDCGKSVQDQVEIPSKSTTTITYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSDAKFGKSYDVSKRVSPEVSASTSADTVTGVAAKGSNSGSSSTTLYNVSKENRADPGVGSSFGLSSRSDYQHKKAKLLYMQEEVSRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCLKNSISDQLKLISEALGEDLSIPCSTSTCSNKADTTTMARVRCGSSMDQSFFLKNKCVKGTTELLDEPPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKATGSKDNCGINEGTSSATGGDTSHPRALGNIGLNSIPETQFQGIDMGSSIAANAEESGLNPEQWSQEKRSKLECQVTSTMDGTLMGFVPYRHGGVEVGGLGSVSLTLGLSHGVEGVQNQQQLQEEQLRHDVGGHMIHEFVG 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02884 786 MobiDBLite consensus disorder prediction 398 424 - -
Gma13g02884 786 Pfam Associated with HOX 352 506 IPR006563 -
Gma13g02884 786 Pfam Homeobox KN domain 591 630 IPR008422 GO:0003677|GO:0006355
Gma13g02884 786 MobiDBLite consensus disorder prediction 650 668 - -
Gma13g02884 786 MobiDBLite consensus disorder prediction 281 302 - -
Gma13g02884 786 ProSiteProfiles 'Homeobox' domain profile. 571 634 IPR001356 GO:0003677
Gma13g02884 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 758 - -
Gma13g02884 786 CDD homeodomain 574 635 IPR001356 GO:0003677
Gma13g02884 786 Gene3D - 577 639 - -
Gma13g02884 786 SMART HOX_1 574 638 IPR001356 GO:0003677
Gma13g02884 786 MobiDBLite consensus disorder prediction 398 422 - -
Gma13g02884 786 SUPERFAMILY Homeodomain-like 576 640 IPR009057 -
Gma13g02884 786 MobiDBLite consensus disorder prediction 281 299 - -
Gma13g02884 786 MobiDBLite consensus disorder prediction 650 669 - -
Gma13g02884 786 SMART prehox3 347 507 IPR006563 -
Gma13g02884 786 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02884 Gma-Chr13 43408623 43414486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02884 274 644 Homeobox Transcription Factor Family AT5G02030 43.700 1.80e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma13g02884 POX 9.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02884 - - gmx:100809720 1531.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02884 13 43408623 43414486 Gma13g02884 13 43408623 43414486 ECH
Gma13g02884 13 43408623 43414486 Gma12g01661 12 36849248 36855129 GST
Gma13g02884 13 43408623 43414486 Gma12g00691 12 6123907 6129774 PCT
Gma13g02884 13 43408623 43414486 Gma11g01618 11 17441872 17447527 PCT
Gma12g00691 12 6123907 6129774 Gma13g02884 13 43408623 43414486 PCT
Gma11g01618 11 17441872 17447527 Gma13g02884 13 43408623 43414486 PCT