Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02879 ATGTCTCAGCAAGGCGAATCATCGGACCCGAAATCGGGGAAGAAGGACTTCTCAACCGCGATTCTGGAACGCAAAAAGTCGCCGAACCGGCTTGTCGTGGATGAGGCTGTCAACGACGACAACTCCGTGGTCACCATGCATCCCCAAACCATGGAAAAGCTTCAGCTTTTCCGAGGGGACACTATCCTCATCAAGGGTAAGAAACGGAAGGATACCATTTGCATAGCTCTTGCTGATGAGAACTGTGAGGAGCCGAAGATCAGGATGAATAAAGTTGTGAGGTCAAATTTGCGGGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCGGATGTTAAATATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCCTATTTCTTGGAAGCTTACCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTGGTTGAAACCGATCCTGGAGAATATTGTGTTGTTGCTCCAGACACTGAAATTTTCTGTGAGGGGGAGCCTTTGAAAAGAGAAGATGAAGAGAGACTGGATGAAGTCGGGTATGATGATGTGGGTGGTGTCAGGAAACAAATGGCTCAGATTCGTGAGTTGGTTGAGCTTCCATTGAGGCATCCACAGCTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTACTTTATGGACCCCCAGGTTCTGGGAAGACATTAATAGCAAGAGCTGTAGCTAATGAAACTGGAGCTTTTTTCTTTTGTATTAACGGACCAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCGTTTGAAGAAGCAGAAAAGAATGCACCATCCATTATCTTCATTGATGAAATTGATTCCATTGCCCCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACTAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCCGATGAAGTTGGGAGACTTGAAGTCCTTCGCATACATACTAAAAACATGAAGCTATCTGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTAATTGACTTGGAGGATGAGACTATTGATGCAGAAGTACTGAATTCCATGGCAGTTACAAATGAGCATTTCCAGACTGCCCTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAAGTGCCTAATGTCAGCTGGGAAGACATTGGAGGCCTTGAAAATGTCAAGCGTGAACTGCAAGAGACTGTACAATATCCAGTTGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCTCCATCTAAAGGAGTACTTTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCTAATGTTAGAGAAATTTTTGACAAGGCCAGACAATCGGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCTATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCGGCTGATAGAGTTCTAAATCAACTTTTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCTGACATCATTGACCCAGCACTTCTTCGACCAGGCCGTCTGGATCAATTGATCTATATTCCTCTCCCTGATGAGGATTCCCGGCATCAAATCTTTAAAGCCTGCTTGAGGAAGTCACCTATCGCAAAAAATGTTGATTTGAGAGCATTGGCTAGGCACACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCCATAAGAGAAAACATAGAGAAGGACATTGAGCGAGAGAGGAAGAGTAGGGAAAACCCTGAGGCCATGGATGAAGATACCGTCGACGACGAAGTTGCGGAGATCAAGGCTGCTCATTTTGAGGAGTCAATGAAGTTTGCACGGAGGAGTGTTAGTGATGCTGATATTCGCAAGTATCAGGCATTTGCTCAGACCTTACAGCAATCAAGAGGGTTTGGAAGTGAATTTAGGTTTCCAGAGTCTGGAGATAGGACTACTACTGGATCTGACCCCTTTGCAGCTTCTGCTGGTGGGGCTGACGAAGATGATCTATATAGTTAG 2424 0.4431 MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESGDRTTTGSDPFAASAGGADEDDLYS 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02879 807 Pfam AAA+ lid domain 397 439 IPR041569 -
Gma13g02879 807 Pfam AAA+ lid domain 673 714 IPR041569 -
Gma13g02879 807 Gene3D - 8 112 - -
Gma13g02879 807 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 782 - -
Gma13g02879 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 765 IPR027417 -
Gma13g02879 807 Gene3D - 655 764 - -
Gma13g02879 807 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 768 IPR005938 GO:0016787
Gma13g02879 807 MobiDBLite consensus disorder prediction 1 21 - -
Gma13g02879 807 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Gma13g02879 807 SMART CDC48_N_2 30 113 IPR003338 -
Gma13g02879 807 PANTHER AAA-FAMILY ATPASE 5 782 - -
Gma13g02879 807 SUPERFAMILY ADC-like 26 110 IPR009010 -
Gma13g02879 807 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Gma13g02879 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Gma13g02879 807 Gene3D - 113 209 - -
Gma13g02879 807 Gene3D - 210 374 IPR027417 -
Gma13g02879 807 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Gma13g02879 807 CDD AAA 484 651 - -
Gma13g02879 807 SMART AAA_5 514 653 IPR003593 -
Gma13g02879 807 SMART AAA_5 241 377 IPR003593 -
Gma13g02879 807 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Gma13g02879 807 MobiDBLite consensus disorder prediction 771 807 - -
Gma13g02879 807 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Gma13g02879 807 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Gma13g02879 807 CDD AAA 211 374 - -
Gma13g02879 807 Gene3D - 468 651 IPR027417 -
Gma13g02879 807 MobiDBLite consensus disorder prediction 771 793 - -
Gma13g02879 807 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Gma13g02879 807 Gene3D - 376 467 - -
Gma13g02879 807 SMART CDC48_2_2 130 196 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02879 Gma-Chr13 43327710 43333025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02879 447 710 Calmodulin-binding Proteins AT3G56690 47.727 1.03e-78 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02879 13 43327710 43333025 Gma13g02879 13 43327710 43333025 ECH