Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02875 ATGGTGATGGCGAAGGGCACGATGGACGTGGCAGCTTTGGCAAAGAAGTTGTCGGAGAAGTTTAAGAGGAAGATTGAGGTTGTCCTTCCCAAGAAGGAGAAAGAGAAGGGGAAGGAAAAGGAAAGTGAGAAAGAGGGTGGTGGCAAAGGAGAGAATGACTCAGCCAAAAAGAAGAAAATGGGTGGCAATGGTGGTGGCCGCGAAGGACACAATGATAAGGGTAATGAGGGTGGTGGTGGTAATGGCCAGAGGAAAACGGAGCAGATCGAACATTGTCAACTATTATGTAACTCCCTCCGGGACACGTGGAAGCCGACACTTGTATATATTCGAAGCCTGAAGAACCCTAAGCCCTCACTTGCTCGGGATTTTACTTTACTCTCTCACGGTAGCACCAGACACACAACTCTAGATCTATTGTTTTTCGATTCAAGATATTTGAGATTGAAGATGGTGTCTGACGCCAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCCGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTGCTGCTTCGTCCAAAACGACGTCGTCGGAGAAGCTTGCCGACGGAATTAGGGACATTCAGATTTCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTATGTCAGTTACTTTCCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTACGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGTTTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCCGCTGAAAATTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATTCTTTTACTTGATGAACCAACCAATCACCTTGACTTGGAAGCTTGTGTGTGGCTGGAAGAGAATCTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATTCACATGCAAAACAAGAAGCTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCTCGATTTGGTCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACGCCAGATAATCTGATCTACAAGAAGCTTGACTTTGGTGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAACGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATCGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAAATTTCTGCCCTCCAGTTTATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTATCCGGTAAAGCGCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAATCATTTGGATATTGAAACAATTGACTCATTGGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 2232 0.4628 MVMAKGTMDVAALAKKLSEKFKRKIEVVLPKKEKEKGKEKESEKEGGGKGENDSAKKKKMGGNGGGREGHNDKGNEGGGGNGQRKTEQIEHCQLLCNSLRDTWKPTLVYIRSLKNPKPSLARDFTLLSHGSTRHTTLDLLFFDSRYLRLKMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTTSSEKLADGIRDIQISDRTCTGVLCSHPLSRDIRIESMSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLSLEKEAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAENLFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKKLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQFHQHLAEKLDLEISALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02875 743 Coils Coil 435 455 - -
Gma13g02875 743 ProSitePatterns ABC transporters family signature. 361 375 IPR017871 GO:0005524
Gma13g02875 743 PANTHER - 147 743 - -
Gma13g02875 743 Pfam ABC transporter 235 389 IPR003439 GO:0005524
Gma13g02875 743 SMART AAA_5 553 741 IPR003593 -
Gma13g02875 743 SMART AAA_5 241 443 IPR003593 -
Gma13g02875 743 CDD ABCF_EF-3 528 719 - -
Gma13g02875 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 463 IPR027417 -
Gma13g02875 743 Pfam ABC transporter 545 675 IPR003439 GO:0005524
Gma13g02875 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 217 457 IPR003439 GO:0005524
Gma13g02875 743 Pfam ABC transporter 428 504 IPR032781 -
Gma13g02875 743 Gene3D - 217 481 IPR027417 -
Gma13g02875 743 Gene3D - 504 741 IPR027417 -
Gma13g02875 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 528 743 IPR003439 GO:0005524
Gma13g02875 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 722 IPR027417 -
Gma13g02875 743 MobiDBLite consensus disorder prediction 24 74 - -
Gma13g02875 743 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 147 743 - -
Gma13g02875 743 MobiDBLite consensus disorder prediction 24 86 - -
Gma13g02875 743 CDD ABCF_EF-3 217 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02875 Gma-Chr13 43290042 43296531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02875 237 415 Calmodulin-binding Proteins AT2G36910 27.568 1.65e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02875 K06185 - gmx:100798721 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02875 13 43290042 43296531 Gma13g02875 13 43290042 43296531 ECH
Gma13g02875 13 43290042 43296531 Gma12g01671 12 37048869 37052189 GST
Gma13g02875 13 43290042 43296531 Gma12g00707 12 6282455 6286918 PCT
Gma13g02875 13 43290042 43296531 Gma11g01600 11 17242263 17246816 PCT
Gma12g00707 12 6282455 6286918 Gma13g02875 13 43290042 43296531 PCT
Gma11g01600 11 17242263 17246816 Gma13g02875 13 43290042 43296531 PCT