Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02874 ATGCAGAGATCCGGTTATGGGTCCGACGGAATATACAGGTCACTCAGACCTTCCATCGTTTTTCCCAAAAACTCAAACCTCTCACTCGTTTCCCATCTTTTCAACAGAGTCGCAGCCTTTCCATCAAAACCAGCTCTTATCGATGCAGACTCTTCAGAAACACTTTCTTTCGCGGAACTCAAATTGCTAACTGTTAGGGTCGCTCACGGCCTCCTTCGTCTCGGAGTGACCAAAAACGACGTCGTTCTCTTCCTCGCTCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCGCCTCTCTCGGCGCTGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCTCCAAACAGGCCAACGACTCCAAACCCAAACTTTTGGTAACCGTCGCCGAATTGTGGGACAAACTCGAACACCTCAAACTCCCCGCGGTCTTCCTACGTTGTTCCAACGCTCCCCACGCGCCATCCAGCGCGACTAGCTTCGACGCGCTGGTTCAACTCGCCGGGTCGGTGACCGAGTTTCCCGAAATTAAAATTAAACAGAGTGACACTGCGGCACTGTTGTATTCTTCGGGTACCACCGGCTTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTCGCGGCGTCGTTGATGATTGGCTTCGACGATGATTTGGCAGGGGTGTTGCATAGCGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTTTTTGGTTTGATGGTCATTTCGTACGGACAGCTTCAGAGGGGTAGTGCGGTTGTGTCTCTCAAGAAGTTTGAGTTTGAATTGGTTCTGAAGACCATTGAGAAGTTTAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCTCTCAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGAAGGAGTGTGCTAAACGTTTTCCTCATGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATGCAAGGATGGGAATTCGGAATAGTGGCTCTACGGGAATGCTTGTCGCCGGAATGGAGGCTCAAGTAGTTAGTGTGGATACTCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATGGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGAATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCGCCGGCAGAACTTGAAGGGCTTCTGGTTTCTCATGCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGTTCACCCAATAGTTCACTCACAGAGGAAGATGTTCAAAAATTTATTGCTAAGCAGGTAGCGCCTTTCAAAAGAATAAGAAGAGTGACATTCATCAATGCTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1623 0.4831 MQRSGYGSDGIYRSLRPSIVFPKNSNLSLVSHLFNRVAAFPSKPALIDADSSETLSFAELKLLTVRVAHGLLRLGVTKNDVVLFLAPNDIRYIVCFLAVASLGAAVTTVNPAYTAAEVSKQANDSKPKLLVTVAELWDKLEHLKLPAVFLRCSNAPHAPSSATSFDALVQLAGSVTEFPEIKIKQSDTAALLYSSGTTGLSKGVVLTHGNFVAASLMIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKFKVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGYGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHAEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIAKQVAPFKRIRRVTFINAVPKTASGKILRRELIEKVRSKI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02874 540 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Gma13g02874 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 539 - -
Gma13g02874 540 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 539 - -
Gma13g02874 540 CDD 4CL 21 532 - -
Gma13g02874 540 Gene3D - 438 539 IPR045851 -
Gma13g02874 540 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Gma13g02874 540 SUPERFAMILY Acetyl-CoA synthetase-like 18 538 - -
Gma13g02874 540 Pfam AMP-binding enzyme 35 442 IPR000873 -
Gma13g02874 540 Gene3D - 9 437 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02874 Gma-Chr13 43258162 43263598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02874 1 540 Monolignol Biosynthesis Gene Families AT4G05160 65.993 0.0 768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02874 13 43258162 43263598 Gma13g02874 13 43258162 43263598 ECH
Gma13g02874 13 43258162 43263598 Gma12g00709 12 6319940 6323415 PCT
Gma13g02874 13 43258162 43263598 Gma11g01598 11 17190598 17196841 PCT
Gma12g00709 12 6319940 6323415 Gma13g02874 13 43258162 43263598 PCT
Gma11g01598 11 17190598 17196841 Gma13g02874 13 43258162 43263598 PCT