Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02873 atgggaagagctccttgttgtgacaaggcaaatgtgaagagaggaccatggtcaccagaagaagactcaaagctgaaggattatatagagaagcatggaactggagggaattggattgctcttcctcagaaagctggtctaaagagatgtggaaaaagttgcagattgagatggcttaactatcttaggcctaacattaagcacggggaattctccgatgaggaagacagaatcatttgcagcctttatgctaatattggaagcagGTGGTCAATTATAGCTACTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAGAAAACTCATGGGGTTGCTTCCTGCATCTCATCAAAGAATAGCACCCTTTCAACAATCCTCACCTCAAAACCTTTCTTCATTTCCTTCTCACTCTCACTCATCATCACTATCCTCTTCAATCTATAGTGACTACTACAACCACAACTCTAATCATTATTACATGCCAGCCCCAACCTCATCTTTCACATGCCTTGAACCAATTTCTGTTCCTTCAAGTAATTACACGAACACAACAACAGCCTCCACCTTGAACCCTTTTTACCAAAACCAAGAACCCTTGGCTAGTATTATTAGTCCCATGCAGTATTACCCCATCAAAGACAGTTCCATGCTTGTGTTTGGAAGTGAAACAAGTTGCAGTTCCTCTGATGGAAGCTGCAGTCAGGTTAGCCTTGGAAGAGAGGTCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGACCATCAGAACATGAACAACATTAATCATGATGGAGGTGAAGAATATGTGGACCAATGGACACAGAAGCCAAACGGGCACATTTTTCAGACTCAACAAACAGCAATGGATTATGATCTTGAGGTTATTAGGAACCTGATTAGTAGCAACAGTAATAGTAGTAATAGTAATAATGAGTACTTGAGTGTTGATGAAAACAAGACGGAGGAGAAGGGTGTGTACTACAACTACTGA 1023 0.3021 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIATQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPFQQSSPQNLSSFPSHSHSSSLSSSIYSDYYNHNSNHYYMPAPTSSFTCLEPISVPSSNYTNTTTASTLNPFYQNQEPLASIISPMQYYPIKDSSMLVFGSETSCSSSDGSCSQVSLGREVKQEDMGFQNFMFGDHQNMNNINHDGGEEYVDQWTQKPNGHIFQTQQTAMDYDLEVIRNLISSNSNSSNSNNEYLSVDENKTEEKGVYYNY 340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02873 340 PANTHER TRANSCRIPTION FACTOR RAX3 1 321 - -
Gma13g02873 340 SMART sant 13 64 IPR001005 -
Gma13g02873 340 SMART sant 67 115 IPR001005 -
Gma13g02873 340 Gene3D - 69 140 - -
Gma13g02873 340 CDD SANT 16 62 IPR001005 -
Gma13g02873 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma13g02873 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma13g02873 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma13g02873 340 PANTHER OS09G0431300 PROTEIN 1 321 - -
Gma13g02873 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma13g02873 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma13g02873 340 CDD SANT 70 113 IPR001005 -
Gma13g02873 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma13g02873 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma13g02873 340 Gene3D - 7 68 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma13g02873 Gma-Chr13 43249299 43250920 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02873 1 119 MYB Transcription Factor Family AT5G57620 89.076 3.89e-78 241
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g02873 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02873 K09422 - gmx:100808114 651.358
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02873 13 43249299 43250920 Gma13g02873 13 43249299 43250920 ECH
Gma13g02873 13 43249299 43250920 Gma12g01674 12 37115036 37116892 GST
Gma13g02873 13 43249299 43250920 Gma12g00711 12 6338281 6340505 PCT
Gma13g02873 13 43249299 43250920 Gma11g01595 11 17169545 17171154 PCT
Gma12g00711 12 6338281 6340505 Gma13g02873 13 43249299 43250920 PCT
Gma11g01595 11 17169545 17171154 Gma13g02873 13 43249299 43250920 PCT