Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02865 ATGGATGTTCACGAAGACACACTCAAGTACATGAATGATTTTGAGCTGTACGACTTTGTTGCTGATTCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGATCATTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCAGCAGCCCCTTTCATCTCCTGCAAACCCTTTTGATCAGAACAACAACAATAATAATAATGATGCTGTGAATGTCTATGATCCAAGCTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGGAGAAGAAGAAAATGATGGAGAGCATTCTTCTGGGACAACGACAACGACAACGAAGAATGCTGATGGCAAACTGAAACTAAAAACTGATAGGTCAAAAACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTCCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCATGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCAGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTGATGGCCCGTAATATTAGTCATCCAAACTGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTTAGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGGTGAGAGTTTTCTACTTACATTTACGTTGAATGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA 972 0.4136 MDVHEDTLKYMNDFELYDFVADSNFDQFINLIRGENEDANCDHFGSDLINDCFVNNQQQPLSSPANPFDQNNNNNNNDAVNVYDPSSTFSSFSCFDGELKGEGEEENDGEHSSGTTTTTTKNADGKLKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQVMARNISHPNCKKIMQVDMFQVEERGYLAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVGESFLLTFTLNVKGTEQEINLPNLKLWVTGALLNQGFEFVASFPA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02865 323 MobiDBLite consensus disorder prediction 100 131 - -
Gma13g02865 323 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 319 - -
Gma13g02865 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 204 IPR036638 GO:0046983
Gma13g02865 323 MobiDBLite consensus disorder prediction 58 82 - -
Gma13g02865 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Gma13g02865 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 319 - -
Gma13g02865 323 SMART finulus 137 186 IPR011598 GO:0046983
Gma13g02865 323 Coils Coil 177 197 - -
Gma13g02865 323 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Gma13g02865 323 Gene3D - 123 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02865 Gma-Chr13 43159600 43160999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02865 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.840 3.06e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g02865 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02865 - - gmx:100805451 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02865 13 43159600 43160999 Gma13g02865 13 43159600 43160999 ECH
Gma13g02865 13 43159600 43160999 Gma12g01683 12 37273700 37275073 GST
Gma13g02865 13 43159600 43160999 Gma12g00724 12 6506020 6507343 PCT
Gma13g02865 13 43159600 43160999 Gma11g01581 11 16992899 16994526 PCT
Gma12g00724 12 6506020 6507343 Gma13g02865 13 43159600 43160999 PCT
Gma11g01581 11 16992899 16994526 Gma13g02865 13 43159600 43160999 PCT