Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02863 ATGTTGTCACAAATGGACATGGAGGAGCTTGTCTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCCGTCGTTCCTACCACCACCACCATCACCACTGTCACTGCCGCTACCACCCCCATCATGACATCTAGCTGTTCAAGTGCTTCTTGTGGCGGTGGTTCTTCTTCATCCACAACCTTTGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTAGCACAAGGAAAAGTAGGAGGGGACCCTCCTCATCGTCACAAGGACTTATATGGTAGTGATGTTAAGACAGAGAAGCTGGGTAGCACCAAAGTCGATCATTTCTATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGGTGGAGGAGAAAAAGTCGTCATCACCACCACTGTCGTTGCCGCCGCCGCCACCACCACCACCACCGTCTTCGTCGTCACTATTTAATTTTGAAGAAGCAAAACAAAGTCATCACATGAAGAATATTATTAGCCCTTCTGTTTCCCTTCAATTAGGGTGTGGCAATAATAACAAGGTTGGTTTAAATTTCCATGGCAACAAATCCAAGATTCACGAGTGTTCCATCTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTACCAATAATAACAATATTGTTCAGACAACAACAACAACTTCTAATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAGTTGGATCTTAACCTCCCGGCGCCGGAAGACGATCTCCGGGACTCCAAATTTCAGTTTCCGGCGACTCAGAATTCTATGATGCGGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 948 0.4736 MLSQMDMEELVSCNNNDATNIAKGKRTKRRLRPLSPCAVVPTTTTITTVTAATTPIMTSSCSSASCGGGSSSSTTFEEEEEDMANCLILLAQGKVGGDPPHRHKDLYGSDVKTEKLGSTKVDHFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSSSPPLSLPPPPPPPPPSSSSLFNFEEAKQSHHMKNIISPSVSLQLGCGNNNKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASTNNNNIVQTTTTTSNGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPATQNSMMRSAAPALVGCHY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02863 315 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Gma13g02863 315 Pfam C2H2-type zinc finger 126 152 - -
Gma13g02863 315 Pfam C2H2-type zinc finger 224 248 - -
Gma13g02863 315 SUPERFAMILY beta-beta-alpha zinc fingers 126 246 IPR036236 -
Gma13g02863 315 MobiDBLite consensus disorder prediction 162 178 - -
Gma13g02863 315 PANTHER ZINC FINGER PROTEIN ZAT5 1 315 - -
Gma13g02863 315 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 315 - -
Gma13g02863 315 MobiDBLite consensus disorder prediction 143 181 - -
Gma13g02863 315 Gene3D Classic Zinc Finger 210 273 - -
Gma13g02863 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Gma13g02863 315 SMART c2h2final6 127 149 IPR013087 -
Gma13g02863 315 SMART c2h2final6 224 246 IPR013087 -
Gma13g02863 315 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Gma13g02863 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02863 Gma-Chr13 43134543 43135859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02863 16 315 C2H2 Transcription Factor Family AT2G28200 43.590 1.36e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02863 zf-C2H2_6 2.1e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02863 13 43134543 43135859 Gma13g02863 13 43134543 43135859 ECH
Gma13g02863 13 43134543 43135859 Gma03g01708 03 43256452 43257512 ECH
Gma13g02863 13 43134543 43135859 Gma12g01686 12 37304460 37305861 ECH
Gma03g01708 03 43256452 43257512 Gma13g02863 13 43134543 43135859 ECH
Gma19g01758 19 46895445 46896305 Gma13g02863 13 43134543 43135859 ECH
Gma10g00543 10 5590845 5592009 Gma13g02863 13 43134543 43135859 ECH
Gma13g01255 13 26863900 26864766 Gma13g02863 13 43134543 43135859 ECH
Gma13g02863 13 43134543 43135859 Gma12g01686 12 37304460 37305861 GST
Gma13g02863 13 43134543 43135859 Gma12g00726 12 6532347 6533294 PCT
Gma13g02863 13 43134543 43135859 Gma11g01579 11 16967680 16969026 PCT
Gma12g00726 12 6532347 6533294 Gma13g02863 13 43134543 43135859 PCT
Gma11g01579 11 16967680 16969026 Gma13g02863 13 43134543 43135859 PCT