Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02862 ATGATTTCAAGGGCCACATCTAGCTTCCCAAGTGTCCACCACCAAGGGCTTCAGATGTTCCCTGACCCGGAAGGTTTTGTGTCACCCTCTGAGGAATCAGGATCATCAGGTACTACTTCACACTCTAGTTCCCTCCTCTTTAATCTCTCTATTCTGAAGGACAAGCTTAGTGAGGTGCAGACCCTGGTAGGTGTTATTCTCTCGCCAAATCAAAGCCTTCCCGAGCCAACTTCCATGGCCATATCCAGCATGAACTCCATTATCCAAGAAATCATAGTCACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTACCCCTCCAGGTACTACTAACAAATTGCACCAGCAGAACAAGTCGTTGTTGCCTCACTCAAATAATAATTCTGGCACAAATACAAGTGTACTAATTGGTAACAACATAGGCTCAGATAATATTAGTGACCATCAGGGTTTGTTTTCTAGTACTGAGTCAGAGACACTTGACTGGTTTAGTACTGAAAGCTATAACAATAACATTGATAATAGCAATAGCAATATTAGTAAGGTTGCAAATATCAGTAGTGAAAACAATATTATTAGTAGAGGAAGGGATGAACATGAACCTAATGAAGAAGAAGGGTACTATAGAGGGGTTTCACCGAAGATGAATAGTGATATAATTGAATTGGATGCTGCGAATTTGTTGGCTAAGTACACTCACTATTGCCAAGTTTGTGGCAAAGGGTTCGAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAACAAAGGGAACTTATTGGAAGGGGGAAGAGAGTGTTTGATGAGTACTGTGAAGCCAAAGTATTCGTGTCCTCAAGAAGGGTGCAGGTGGAACCAGAGACATGTCAAGTTTCAGCCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAATTCTCGGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCACGTGTGGAACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCGTGGGGCACCAACCAGCAGCAGCTATCAACAATAGTAATGCTCTCTCTTTCTCGGCCAAATTAGAGCAGCAGCACACATTGCAAATGTAG 1236 0.4385 MISRATSSFPSVHHQGLQMFPDPEGFVSPSEESGSSGTTSHSSSLLFNLSILKDKLSEVQTLVGVILSPNQSLPEPTSMAISSMNSIIQEIIVTATSMMFTCQQMALTTPPGTTNKLHQQNKSLLPHSNNNSGTNTSVLIGNNIGSDNISDHQGLFSSTESETLDWFSTESYNNNIDNSNSNISKVANISSENNIISRGRDEHEPNEEEGYYRGVSPKMNSDIIELDAANLLAKYTHYCQVCGKGFERDANLRMHMRAHGDEYKTNAALSNPIKNKGNLLEGGRECLMSTVKPKYSCPQEGCRWNQRHVKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCTCGTSFSRKDKLMGHVALFVGHQPAAAINNSNALSFSAKLEQQHTLQM 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02862 411 PANTHER OS08G0562300 PROTEIN 7 395 - -
Gma13g02862 411 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 395 IPR044300 GO:0010044|GO:0010447
Gma13g02862 411 SUPERFAMILY beta-beta-alpha zinc fingers 235 262 IPR036236 -
Gma13g02862 411 MobiDBLite consensus disorder prediction 1 42 - -
Gma13g02862 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Gma13g02862 411 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Gma13g02862 411 Gene3D Classic Zinc Finger 331 381 - -
Gma13g02862 411 SMART c2h2final6 333 355 IPR013087 -
Gma13g02862 411 SMART c2h2final6 237 259 IPR013087 -
Gma13g02862 411 SMART c2h2final6 295 328 IPR013087 -
Gma13g02862 411 Pfam C2H2-type zinc finger 237 259 - -
Gma13g02862 411 Gene3D Classic Zinc Finger 216 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02862 Gma-Chr13 43126085 43127320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02862 26 388 C2H2 Transcription Factor Family AT5G22890 45.600 3.31e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02862 zf-C2H2_6 0.00034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02862 - - gmx:100804910 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02862 13 43126085 43127320 Gma13g02862 13 43126085 43127320 ECH
Gma13g02862 13 43126085 43127320 Gma12g01688 12 37318898 37320938 GST
Gma13g02862 13 43126085 43127320 Gma12g00728 12 6548443 6549633 PCT
Gma13g02862 13 43126085 43127320 Gma11g01577 11 16947929 16949161 PCT
Gma12g00728 12 6548443 6549633 Gma13g02862 13 43126085 43127320 PCT
Gma11g01577 11 16947929 16949161 Gma13g02862 13 43126085 43127320 PCT