Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02858 atgagatggcagaacaacccctttgtaaagaggaatcggagaaggggtgtttcggatgagatggcagaacaacccctttgtgaagaggaaccggagaaaggtggtgtttcggaggagaAAGATTCTAATGGGGTAGCCCTAGCTTTGGTTAATGATGATGGTGATGAGGGGAATAAGAAGAAGAGGAGAATGAAGAAGCGGTTGGAGATGCCTCAGTCTGAGAGAAGGTTTACGCGGTCGGCATTGAAGGTAAAATCTGAGGAAACAAATGATGTGGAACATGTTGGTGTGGCTGGAATTGATGATGATGGTGTTAAGGGGGAAACTGAAGCCTCAGCTGAGGCTTCGTTGTTAATGACTCCTCCTAGTTCGGCAAAATTTTCGAATTCTAGGTTGAAGAAGTTTCCTTCCAAGTTGAAGGATCTTCTGGCAACAGGGATTCTTGAGGGGCTGCCAGTGATGTACATGAAGGGAGCGAAGACACGTTGGAAAGCCGGAGAAAAGGGGCTTCAAGGAGTGATTCAAGACTCCGGTGTTTTGTGCTTTTGTAAGATTTGTAATGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAACAAGCGGCCCCCTGAGTATATTTACATCCATGATGGGAATTGTGGAAAAACTCTCCGTGATGTCATGAATGCCTGCTGCTGCTGCGATTTTCCATTGGAGTCCATGGATGAAGCCGTCCAAAAGCTCCTTGGTGACTTCACAATGAAGAAATCTTCCATCTGTTTGAACTGCAGAGGAGCATGCAAGGGCGTGTCAAAGCTTGTATGTGATTTGTGCTTAGCAAGCCCCCCTCAAACAGCCATGGCTAGCCGCAAAGTAATTTCACAACCAGTTCAACCCAGATCACCAGAACCAGTTGTGATTCAAAAAtcattagacaatgaagtacagccaaattcattagacaatgaggtgccgccaaattctttagacaatgaggtgcagccaaattcattagacactggggtgcagccaaaatcgtttagcaatgGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCAGATGGAACTGAACTAGCCTACTATGCTCATGGGCAGAAACTGTTGGTTGGTTACAAAAAGGGATGTGGAATTTTTTGTACCTGCTGCAATGAGCAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTGCACATATACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGATCATCGGAGGTTTTCCAACAATGACAATGATGATCTCTGCATCATATGCGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTACCATGCATTCCTAGTGGTAGTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACATGAGGTGAATGCTCTGGCGGCTGCTGGAAGGATTGCAGGCCCTGATATTTTGGAACTGATGAACAAAAGATGCATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTATGCAGTCGCCCCAATTTCAGCAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGAGCATAACATGGAGAACCTAGAGAAATTGCCTGAAGGAAATTGGTTCTGTAGTGGAAATTGCAGTCATATTCATACTGCTCTGACAGATCTGGTGGCTTCTAAGGAGAAGGATGTCCCAGATCCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAAAAAAGTTTAGAAATTGGAGCTGGTCTAGATGTTAAATGGAGGGTTATGAACTGGAAATTAGATTCTGATTCTGATGATTCTGTTGAAACTAGGAAATTGCTTTCAAAAGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCAACCATGTTGTTTGGAAGGAACATTCGTGGTCAGGATTTTAGTGGAATATACTGTGCAGTTCTTACTGTCAATGGGGATATCGTGTCTGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATAGCTGAGCTTCCATTGGTTGCGACAACTGCTGATCATCAAGGACAGGGTTATTTTCAGTGCCTGTTTTCTTGTATTGAGACGCTACTTGGATCTTTAAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAGTCAATATGGACTGGTAAATTTGGGTTTACAAAGCTACCCCAAGATGAGATAAACAAATATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCAGTGTTACAGAAGCCTGTTCCTGAAACACTCTGA 2490 0.394 MRWQNNPFVKRNRRRGVSDEMAEQPLCEEEPEKGGVSEEKDSNGVALALVNDDGDEGNKKKRRMKKRLEMPQSERRFTRSALKVKSEETNDVEHVGVAGIDDDGVKGETEASAEASLLMTPPSSAKFSNSRLKKFPSKLKDLLATGILEGLPVMYMKGAKTRWKAGEKGLQGVIQDSGVLCFCKICNGVEVVTPTVFELHAGSANKRPPEYIYIHDGNCGKTLRDVMNACCCCDFPLESMDEAVQKLLGDFTMKKSSICLNCRGACKGVSKLVCDLCLASPPQTAMASRKVISQPVQPRSPEPVVIQKSLDNEVQPNSLDNEVPPNSLDNEVQPNSLDTGVQPKSFSNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTELAYYAHGQKLLVGYKKGCGIFCTCCNEQVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDHRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGSWYCKYCQNVFQKDRHGQHEVNALAAAGRIAGPDILELMNKRCIRVVKTVEVDHGGCALCSRPNFSKSFGPRTVIICDQCEKEYHVGCLKEHNMENLEKLPEGNWFCSGNCSHIHTALTDLVASKEKDVPDPLLSLIKKKHEEKSLEIGAGLDVKWRVMNWKLDSDSDDSVETRKLLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGIYCAVLTVNGDIVSAGVFRVFGSEIAELPLVATTADHQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLPQDEINKYKKFYRMMIFQGTSVLQKPVPETL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02858 829 CDD PHD1_AIRE 465 505 - -
Gma13g02858 829 SUPERFAMILY FYVE/PHD zinc finger 548 606 IPR011011 -
Gma13g02858 829 MobiDBLite consensus disorder prediction 1 84 - -
Gma13g02858 829 SMART PHD_3 465 506 IPR001965 -
Gma13g02858 829 SMART PHD_3 554 610 IPR001965 -
Gma13g02858 829 PANTHER AUTOIMMUNE REGULATOR 27 827 - -
Gma13g02858 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 530 IPR013083 -
Gma13g02858 829 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 27 827 - -
Gma13g02858 829 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 714 799 IPR016181 -
Gma13g02858 829 MobiDBLite consensus disorder prediction 313 357 - -
Gma13g02858 829 MobiDBLite consensus disorder prediction 313 362 - -
Gma13g02858 829 MobiDBLite consensus disorder prediction 12 39 - -
Gma13g02858 829 Pfam Tify domain binding domain 172 230 IPR032308 -
Gma13g02858 829 Pfam Tify domain binding domain 398 446 IPR032308 -
Gma13g02858 829 ProSitePatterns Zinc finger PHD-type signature. 466 505 IPR019786 -
Gma13g02858 829 ProSiteProfiles Zinc finger PHD-type profile. 463 508 IPR019787 -
Gma13g02858 829 SUPERFAMILY FYVE/PHD zinc finger 452 507 IPR011011 -
Gma13g02858 829 MobiDBLite consensus disorder prediction 53 84 - -
Gma13g02858 829 Gene3D - 652 823 - -
Gma13g02858 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 612 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02858 Gma-Chr13 43098060 43105663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02858 60 825 PHD Transcription Factor Family AT2G36720 41.892 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02858 - - gmx:100804381 1670.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02858 13 43098060 43105663 Gma13g02858 13 43098060 43105663 ECH
Gma13g02858 13 43098060 43105663 Gma12g01691 12 37339893 37346168 GST